View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2363_low_11 (Length: 338)

Name: NF2363_low_11
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2363_low_11
NF2363_low_11
[»] chr7 (23 HSPs)
chr7 (18-338)||(3148386-3148706)
chr7 (152-337)||(8647717-8647902)
chr7 (168-338)||(6790425-6790595)
chr7 (152-338)||(7876735-7876921)
chr7 (160-338)||(13332059-13332237)
chr7 (152-331)||(8655371-8655550)
chr7 (152-338)||(1302326-1302512)
chr7 (154-338)||(8668480-8668664)
chr7 (170-338)||(8660259-8660427)
chr7 (160-338)||(8630243-8630421)
chr7 (189-338)||(8584474-8584623)
chr7 (186-338)||(10492936-10493088)
chr7 (155-338)||(27829249-27829432)
chr7 (198-338)||(8602749-8602889)
chr7 (192-338)||(8610679-8610825)
chr7 (255-338)||(8591413-8591496)
chr7 (162-307)||(17269146-17269291)
chr7 (254-338)||(8635502-8635586)
chr7 (249-337)||(17261408-17261496)
chr7 (264-338)||(8582678-8582752)
chr7 (261-310)||(8546718-8546767)
chr7 (254-314)||(29576992-29577052)
chr7 (245-313)||(29581159-29581227)
[»] chr5 (2 HSPs)
chr5 (168-338)||(28220962-28221132)
chr5 (177-338)||(42554113-42554274)
[»] chr1 (3 HSPs)
chr1 (170-338)||(4677459-4677627)
chr1 (192-338)||(15596074-15596220)
chr1 (152-322)||(34465149-34465319)
[»] chr4 (5 HSPs)
chr4 (160-338)||(9322973-9323151)
chr4 (160-338)||(9377452-9377630)
chr4 (189-338)||(30776132-30776281)
chr4 (160-326)||(9334945-9335111)
chr4 (192-338)||(35133469-35133615)
[»] chr8 (3 HSPs)
chr8 (186-326)||(43745851-43745988)
chr8 (261-307)||(12529914-12529960)
chr8 (249-317)||(43431028-43431096)
[»] chr2 (9 HSPs)
chr2 (152-338)||(16656501-16656687)
chr2 (189-338)||(43626335-43626484)
chr2 (189-338)||(16661004-16661153)
chr2 (250-338)||(12000348-12000436)
chr2 (177-338)||(12244329-12244490)
chr2 (192-335)||(7543295-7543438)
chr2 (250-338)||(12235813-12235901)
chr2 (192-338)||(12257855-12258001)
chr2 (176-338)||(14705478-14705640)
[»] chr6 (1 HSPs)
chr6 (166-298)||(28911360-28911493)


Alignment Details
Target: chr7 (Bit Score: 293; Significance: 1e-164; HSPs: 23)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 18 - 338
Target Start/End: Complemental strand, 3148706 - 3148386
Alignment:
Q  18 caaggtagcaacgtttgagtttttgaaaacaaaatattacgctttgtatcctaaagtatttatgctcctacgtactatgaaacggtttttattgtttgag 117  Q
    ||||||||||||||||||||||| |||||||||||||||| |||||||||||| |||||||||||||||| ||||||||||| |||||||||||||||||    
T  3148706 caaggtagcaacgtttgagttttcgaaaacaaaatattacactttgtatcctacagtatttatgctcctatgtactatgaaatggtttttattgtttgag 3148607  T
Q  118 aacagaaacctgaacgttttgtttcttcttaatattgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattc 217  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148606 aacaaaaacctgaacgttttgtttcttcttaatattgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattc 3148507  T
Q  218 gtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgat 317  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3148506 gtgcgttgctgtttggctcgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgat 3148407  T
Q  318 caaaggttggttggtgatgct 338  Q
    |||||||||||||||||||||    
T  3148406 caaaggttggttggtgatgct 3148386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 152 - 337
Target Start/End: Complemental strand, 8647902 - 8647717
Alignment:
Q  152 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacaga 251  Q
    ||||||| ||||||| |||||  ||||||||  |||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| ||||| |||    
T  8647902 ttgaaagatcatggcgaaaaaacacgaaggacttgcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcttgatgaacacaataga 8647803  T
Q  252 gttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgc 337  Q
    |||||||||||||||||||| ||||| |||| ||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||    
T  8647802 gttgagattattcacaatgatcaaggaaacagaactacaccttcttttgttgctttcaccgatgatcaaaggttgattggtgatgc 8647717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 168 - 338
Target Start/End: Complemental strand, 6790595 - 6790425
Alignment:
Q  168 aaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcaca 267  Q
    ||||| |||||||||||||| |||||||| ||||| |||||||| ||||| || |||| ||| ||||||||||| ||||| |||||||||||||||||||    
T  6790595 aaaaaatacgaaggatgtgctgtgggaatagacctgggaacaacatattcttgtgttggtgtgtggcttgatgaacacaatagagttgagattattcaca 6790496  T
Q  268 atgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||| | |||||||||    
T  6790495 atgaccaaggtaacaaaaccacaccttcttttgttgctttcaccgatgaccaaaggttgatcggtgatgct 6790425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 152 - 338
Target Start/End: Original strand, 7876735 - 7876921
Alignment:
Q  152 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacaga 251  Q
    ||||||| | ||||| ||||| ||||||||| |||| |||||||| |||||||||||||||||||| || |||||||| ||||||||||| ||||| |||    
T  7876735 ttgaaagattatggcgaaaaaatacgaaggacgtgcggtgggaatagaccttggaacaacgtattcctgtgttgctgtgtggcttgatgaacacaataga 7876834  T
Q  252 gttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    || || |||||||||||||| |||||||||| ||| |||||||||||||||||||||||  |||||||||||||| |||||||||||    
T  7876835 gtcgaaattattcacaatgaacaaggcaacagaacaacaccttcttttgttgctttcacgaatgatcaaaggttgattggtgatgct 7876921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 160 - 338
Target Start/End: Original strand, 13332059 - 13332237
Alignment:
Q  160 tcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagat 259  Q
    ||||| ||||| | ||||||||| |||||||||||||||||||||||||||| || || || |||||||| ||||||||||| ||| | |||||||||||    
T  13332059 tcatgacaaaagaatacgaaggacgtgcagtgggaatcgaccttggaacaacctactcatgtgttgctgtgtggcttgatgaacaccaaagagttgagat 13332158  T
Q  260 tattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||||| ||||| || | ||| ||||||||||||||||||||||   |||||||||| ||| |||||||||||    
T  13332159 tattcacaatgatcaaggaaatagaactacaccttcttttgttgctttcaacaatgatcaaagattgattggtgatgct 13332237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 152 - 331
Target Start/End: Complemental strand, 8655550 - 8655371
Alignment:
Q  152 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacaga 251  Q
    |||| |||| ||||||| ||| ||||| ||| |||| || ||||| ||||| |||||||| ||||| || |||||||| |||||||| || ||||| |||    
T  8655550 ttgacaggttatggcaagaaaatacgagggacgtgctgtcggaatagacctcggaacaacctattcatgtgttgctgtgtggcttgacgatcacaataga 8655451  T
Q  252 gttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttgg 331  Q
    |||||||||||||||||||| |||||||| | ||| ||||||||| ||||||||||||||||| ||||||||||| ||||    
T  8655450 gttgagattattcacaatgatcaaggcaatagaactacaccttctgttgttgctttcactgattatcaaaggttgattgg 8655371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 152 - 338
Target Start/End: Complemental strand, 1302512 - 1302326
Alignment:
Q  152 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacaga 251  Q
    ||||||| ||||||| | ||||||||||||| |||| || ||||| ||||||||||| || |||||||| |||||||| ||||| ||  | ||||| |||    
T  1302512 ttgaaagatcatggcgataaagtacgaaggacgtgctgttggaatagaccttggaactacttattcgtgtgttgctgtgtggctggagaatcacaataga 1302413  T
Q  252 gttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    || ||||| ||  |||| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||||||| | |||||||||    
T  1302412 gtagagatcatctacaacgaccaaggcaacaaaacaacaccgtcttttgttgctttcaccgatgatcaaaggttgatcggtgatgct 1302326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 154 - 338
Target Start/End: Complemental strand, 8668664 - 8668480
Alignment:
Q  154 gaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagt 253  Q
    ||||| ||||||||||| | ||||||||| ||||||||||||| || ||||||||||| ||||| || |||||||| ||||||||| | ||| | |||||    
T  8668664 gaaagatcatggcaaaagaatacgaaggacgtgcagtgggaatagatcttggaacaacctattcatgtgttgctgtgtggcttgatcaacaccaaagagt 8668565  T
Q  254 tgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||||||||||| ||||| |||  ||  ||||||||||||||||||||||   |||| ||||||||| |||| ||||||    
T  8668564 tgagattattcacaatgatcaaggaaaccgaataacaccttcttttgttgctttcaacaatgaacaaaggttgattggcgatgct 8668480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 170 - 338
Target Start/End: Complemental strand, 8660427 - 8660259
Alignment:
Q  170 aaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaat 269  Q
    ||||||||||||| ||||  | ||||| |||||||||||||| |||||||| |||||||| ||||| ||  | |||||  |||| ||||| ||  ||||     
T  8660427 aaagtacgaaggacgtgctattggaatagaccttggaacaacctattcgtgtgttgctgtgtggctggagaatcacaatcgagtcgagatcatctacaac 8660328  T
Q  270 gaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||| |||||||| |||||||| ||||||||||||||||| |||||||||||| |||||||||||    
T  8660327 gaccaaggaaacaaaacaacaccttcatttgttgctttcactgacgatcaaaggttgattggtgatgct 8660259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 338
Target Start/End: Complemental strand, 8630421 - 8630243
Alignment:
Q  160 tcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagat 259  Q
    ||||||||| |||  |||| |||  ||| |||||||| |||||||||||||| ||||| || |||| ||||||| | || ||  | ||||||||||||||    
T  8630421 tcatggcaagaaaacacgatggacatgctgtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagat 8630322  T
Q  260 tattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||||  ||||||| |||| ||||||||| || |||||||| || |||||||||||||||||||||| ||||    
T  8630321 tattcacaatgatgaaggcaataaaatcacaccttccttcgttgcttttaccgatgatcaaaggttggttggtggtgct 8630243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 189 - 338
Target Start/End: Original strand, 8584474 - 8584623
Alignment:
Q  189 gtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaacca 288  Q
    |||||||| |||||||||||||| ||||| || |||| ||||||| | || ||  | ||||||||||||||||||||||| ||  ||||||| |||| ||    
T  8584474 gtgggaatagaccttggaacaacctattcttgtgttggtgtttggttggaagaaaagaacagagttgagattattcacaacgatgaaggcaataaaatca 8584573  T
Q  289 caccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||| ||||||||||| || |||||||||||||||||||||| ||||    
T  8584574 caccttcctttgttgcttttaccgatgatcaaaggttggttggtggtgct 8584623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 186 - 338
Target Start/End: Original strand, 10492936 - 10493088
Alignment:
Q  186 gcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaa 285  Q
    ||||||||||| || ||||||||||| || || || |||||||| ||||||||||| ||| | |||||||| |||||||||||||| ||||| || | ||    
T  10492936 gcagtgggaatagatcttggaacaacctactcatgtgttgctgtatggcttgatgaacaccaaagagttgaaattattcacaatgatcaaggaaatagaa 10493035  T
Q  286 ccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    | ||||||||||||||||||||||   |||||||||||||| | |||||||||    
T  10493036 ctacaccttcttttgttgctttcaacaatgatcaaaggttgatcggtgatgct 10493088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 155 - 338
Target Start/End: Original strand, 27829249 - 27829432
Alignment:
Q  155 aaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagtt 254  Q
    |||||| ||||| |||||||| |||||   | | |||||||| ||||| || |||||||| ||||||||||| |  ||||  ||| | |||||||||||     
T  27829249 aaaggttatggcgaaaaagtatgaagggctttctgtgggaattgacctaggtacaacgtactcgtgcgttgcagcgtggcaggatcaacacaacagagtg 27829348  T
Q  255 gagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||||||||| ||||||||||| || |||||||||| |||||||||||| ||  | || |||||| |||||||||||    
T  27829349 gagattattcacaatgaacaaggcaacaagacaacaccttcttgtgttgctttcacggacaaacagaggttgattggtgatgct 27829432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 198 - 338
Target Start/End: Complemental strand, 8602889 - 8602749
Alignment:
Q  198 gaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttctt 297  Q
    |||||||||||||| ||||| || || ||||||||||  ||  |  ||||||| |  ||||||||||||||||| ||||| |||| ||| || |||||||    
T  8602889 gaccttggaacaacctattcatgtgtagctgtttggcaggaccaaaacaacagggcagagattattcacaatgatcaaggaaacagaactactccttctt 8602790  T
Q  298 ttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||| ||||||||| |||||||| | |||||||||    
T  8602789 ttgttgcttttactgatgataaaaggttgatcggtgatgct 8602749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 192 - 338
Target Start/End: Complemental strand, 8610825 - 8610679
Alignment:
Q  192 ggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacac 291  Q
    ||||| || ||||||||||| ||||| || |||||||| ||||  ||  |  ||||||||| |||||| || || ||||| ||||| |||| |||||| |    
T  8610825 ggaattgatcttggaacaacctattcatgtgttgctgtatggcaggaacaaaacaacagagctgagataatccataatgagcaaggaaacagaaccactc 8610726  T
Q  292 cttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||||||||| ||| ||||||||||||| | |||||||||    
T  8610725 cttcttttgttgctttctctggtgatcaaaggttgataggtgatgct 8610679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 255 - 338
Target Start/End: Complemental strand, 8591496 - 8591413
Alignment:
Q  255 gagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||||||||| ||||| || | ||  |||||||||||||||||||| ||| |||||||||||||| |||||||||||    
T  8591496 gagattattcacaatgatcaaggaaatagaattacaccttcttttgttgcttttactaatgatcaaaggttgattggtgatgct 8591413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 162 - 307
Target Start/End: Complemental strand, 17269291 - 17269146
Alignment:
Q  162 atggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagatta 261  Q
    |||||||||||  | |||||||||||  | ||||| |||||||| || || || || || |||||||| |||| ||| || |||   |||||||||||||    
T  17269291 atggcaaaaaatcaagaaggatgtgccatcggaatagaccttgggacgacatactcatgtgttgctgtgtggcatgaagaacacggtagagttgagatta 17269192  T
Q  262 ttcacaatgaccaaggcaacaaaaccacaccttcttttgttgcttt 307  Q
    | |||||||| |||||||||||||| || || ||||||||||||||    
T  17269191 tacacaatgatcaaggcaacaaaactactccgtcttttgttgcttt 17269146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 254 - 338
Target Start/End: Original strand, 8635502 - 8635586
Alignment:
Q  254 tgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||| || |||||||| ||||| |||| || ||||||||||| ||||||||||||||| |  ||||||||| |||||||||||    
T  8635502 tgagatcatccacaatgagcaagggaacagaatcacaccttcttgtgttgctttcactgacgcacaaaggttgattggtgatgct 8635586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 249 - 337
Target Start/End: Complemental strand, 17261496 - 17261408
Alignment:
Q  249 agagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgc 337  Q
    ||||||||||| ||||||||||| ||||| |||||||  || |||||||||||||||||  || | ||| |||||||| | ||||||||    
T  17261496 agagttgagatcattcacaatgatcaaggaaacaaaattactccttcttttgttgcttttgctaaagatgaaaggttgatcggtgatgc 17261408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 264 - 338
Target Start/End: Complemental strand, 8582752 - 8582678
Alignment:
Q  264 cacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||| ||||| |||||||| |||||||||| ||||||||| ||| ||  |||||| ||| |||||||||||    
T  8582752 cacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttttactaattctcaaagattgattggtgatgct 8582678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 310
Target Start/End: Complemental strand, 8546767 - 8546718
Alignment:
Q  261 attcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcac 310  Q
    ||||||||||| ||||| |||||||| |||||||||| ||||||||||||    
T  8546767 attcacaatgatcaaggaaacaaaacaacaccttcttgtgttgctttcac 8546718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 254 - 314
Target Start/End: Original strand, 29576992 - 29577052
Alignment:
Q  254 tgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgat 314  Q
    |||||| || |||||||| |||||||| | ||||||||||||| |||| ||||||||||||    
T  29576992 tgagatcatccacaatgatcaaggcaatagaaccacaccttctgttgtagctttcactgat 29577052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 245 - 313
Target Start/End: Original strand, 29581159 - 29581227
Alignment:
Q  245 caacagagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactga 313  Q
    |||| ||| |||||| || |||||||| ||||||||   ||||||||||||| |||| |||||||||||    
T  29581159 caaccgagctgagatcatccacaatgatcaaggcaatggaaccacaccttctgttgtagctttcactga 29581227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 91; Significance: 5e-44; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 168 - 338
Target Start/End: Complemental strand, 28221132 - 28220962
Alignment:
Q  168 aaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcaca 267  Q
    ||||| ||| |||||||||| |||||||| || ||||||||||||||||| || |||||||| ||||  ||||| ||||| || ||||||||||||||||    
T  28221132 aaaaaataccaaggatgtgctgtgggaatagatcttggaacaacgtattcatgtgttgctgtgtggcaagatgaacacaatagggttgagattattcaca 28221033  T
Q  268 atgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||| |||||||||||||| || |||||||||||||||||||| |||||| |||||||| |||| ||||||    
T  28221032 atgatcaaggcaacaaaacaactccttcttttgttgctttcaccgatgatgaaaggttgattggcgatgct 28220962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 177 - 338
Target Start/End: Original strand, 42554113 - 42554274
Alignment:
Q  177 gaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaag 276  Q
    |||||| ||||||||||||| ||||||||||||||||||||||| ||| |||| |||   ||||| || || ||||||||||||||||||||||| ||||    
T  42554113 gaaggacgtgcagtgggaatagaccttggaacaacgtattcgtgtgttactgtgtgggaagatgaacaaaatagagttgagattattcacaatgatcaag 42554212  T
Q  277 gcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||| |||||||||||||||||||| ||| || || |||||||| |||||||||||    
T  42554213 gcaacaaaacaacaccttcttttgttgcttttactcatcatgaaaggttgattggtgatgct 42554274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 170 - 338
Target Start/End: Original strand, 4677459 - 4677627
Alignment:
Q  170 aaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaat 269  Q
    |||||| |||||| |||| |||||||| || |||||||| || ||||| || |||||||| ||||| ||  | ||||||||||| ||||||||| |||||    
T  4677459 aaagtatgaaggacgtgctgtgggaatagatcttggaactacttattcatgtgttgctgtgtggctggagaatcacaacagagtggagattatttacaat 4677558  T
Q  270 gaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    || |||||||||||||| |||||||||||||||||||| |||||||||||||||||| ||||| |||||    
T  4677559 gaacaaggcaacaaaacaacaccttcttttgttgcttttactgatgatcaaaggttgattggtaatgct 4677627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 192 - 338
Target Start/End: Complemental strand, 15596220 - 15596074
Alignment:
Q  192 ggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacac 291  Q
    ||||| |||||||||||||||||||| || |||||||| ||||||||||| || || ||||| |||||||| |||||||||||||| |||| ||  ||||    
T  15596220 ggaatagaccttggaacaacgtattcttgtgttgctgtgtggcttgatgaacagaatagagtcgagattatccacaatgaccaaggaaacagaattacac 15596121  T
Q  292 cttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||| |||||||| |||||||||||||| |||||||||||    
T  15596120 cttcttttgtttctttcactaatgatcaaaggttgattggtgatgct 15596074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 152 - 322
Target Start/End: Original strand, 34465149 - 34465319
Alignment:
Q  152 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacaga 251  Q
    ||||||| ||||||| ||||| |  |||||| |||| |||||||| |||||||| ||||| || || || ||||| || ||||  ||  | ||||  |||    
T  34465149 ttgaaagatcatggcgaaaaaatgtgaaggacgtgctgtgggaatagaccttggcacaacctactcatgtgttgcagtatggcaggaacaacacagtaga 34465248  T
Q  252 gttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaag 322  Q
    || ||||||||| ||||||||||||| |||| |||||||||||||||||||||||| ||| ||||||||||    
T  34465249 gtagagattattgacaatgaccaaggtaacacaaccacaccttcttttgttgcttttactcatgatcaaag 34465319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 160 - 338
Target Start/End: Original strand, 9322973 - 9323151
Alignment:
Q  160 tcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagat 259  Q
    ||||||||||| |  |||||||| |||||||||| || || ||||||||||| ||||| || |||||||| ||||||||| | ||| | |||||||||||    
T  9322973 tcatggcaaaagaacacgaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagat 9323072  T
Q  260 tattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||||| ||||| |||  ||| ||||||||||||||||||||||   |||| ||||||||| |||||||||||    
T  9323073 tattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgct 9323151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 160 - 338
Target Start/End: Original strand, 9377452 - 9377630
Alignment:
Q  160 tcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagat 259  Q
    ||||||||||| |  |||||||| |||||||||| || || ||||||||||| ||||| || |||||||| ||||||||| | ||| | |||||||||||    
T  9377452 tcatggcaaaagaacacgaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagat 9377551  T
Q  260 tattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||||| ||||| |||  ||| ||||||||||||||||||||||   |||| ||||||||| |||||||||||    
T  9377552 tattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttgattggtgatgct 9377630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 30776281 - 30776132
Alignment:
Q  189 gtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaacca 288  Q
    ||||| || ||||||||||||||||| ||||| || ||||||||||| || ||| | ||||||||||| ||||| ||||| ||  |||||| ||||| ||    
T  30776281 gtggggatagaccttggaacaacgtactcgtgtgtggctgtttggctggaggagaaaaacagagttgaaattatccacaacgatgaaggcagcaaaatca 30776182  T
Q  289 caccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||||||||||||||||||| |||||||||||| |||| ||||    
T  30776181 caccttcttttgttgctttcactgatggtcaaaggttggtcggtgctgct 30776132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 160 - 326
Target Start/End: Original strand, 9334945 - 9335111
Alignment:
Q  160 tcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagat 259  Q
    ||||||||||| |  |||||||| |||||||||| || || ||||||||||| ||||| || |||||||| ||||||||| | ||| | |||||||||||    
T  9334945 tcatggcaaaagaacacgaaggacgtgcagtgggtatagatcttggaacaacctattcttgtgttgctgtgtggcttgatcaacaccaaagagttgagat 9335044  T
Q  260 tattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttg 326  Q
    |||||||||||| ||||| |||  ||| ||||||||||||||||||||||   |||| |||||||||    
T  9335045 tattcacaatgatcaaggaaaccgaacaacaccttcttttgttgctttcaacaatgagcaaaggttg 9335111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 338
Target Start/End: Complemental strand, 35133615 - 35133469
Alignment:
Q  192 ggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacac 291  Q
    ||||| ||||| |||||||||||||| || ||||| || ||||  ||  | ||| |  |||| || || |||||||| || ||| |||||||||| ||||    
T  35133615 ggaatagacctcggaacaacgtattcatgtgttgcagtatggcaagaacaacactatcgagtcgaaatcattcacaacgatcaaagcaacaaaacaacac 35133516  T
Q  292 cttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||| | ||||||||||| | |||||||||||| | |||||||||    
T  35133515 cttcttgtattgctttcactaaggatcaaaggttgatcggtgatgct 35133469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 186 - 326
Target Start/End: Complemental strand, 43745988 - 43745851
Alignment:
Q  186 gcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaa 285  Q
    ||||||||||| ||||||||||||||||||||||| |||||||| ||||  ||||| || || ||||||||||||||||||||||| ||||||||||||     
T  43745988 gcagtgggaatagaccttggaacaacgtattcgtgtgttgctgtgtggcaagatgaacaaaatagagttgagattattcacaatgatcaaggcaacaaa- 43745890  T
Q  286 ccacaccttcttttgttgctttcactgatgatcaaaggttg 326  Q
      ||| |||||||||||||||| |||||| || ||||||||    
T  43745889 --acaacttcttttgttgcttttactgatcatgaaaggttg 43745851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 307
Target Start/End: Complemental strand, 12529960 - 12529914
Alignment:
Q  261 attcacaatgaccaaggcaacaaaaccacaccttcttttgttgcttt 307  Q
    ||||||||||| ||||| |||||||| |||||||||| |||||||||    
T  12529960 attcacaatgatcaaggaaacaaaacaacaccttcttgtgttgcttt 12529914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 249 - 317
Target Start/End: Complemental strand, 43431096 - 43431028
Alignment:
Q  249 agagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgat 317  Q
    |||||| ||||| |||||||||| |||||||| ||||| ||||  | |||||||||||| || ||||||    
T  43431096 agagttcagatttttcacaatgatcaaggcaataaaacaacactcttttttgttgcttttaccgatgat 43431028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 75; Significance: 2e-34; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 152 - 338
Target Start/End: Original strand, 16656501 - 16656687
Alignment:
Q  152 ttgaaaggtcatggcaaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacaga 251  Q
    ||||||| | |||||||||||  | |||||| ||||||||||||| |||||||||||||| ||||| || |||||||| ||| | ||    |||||||||    
T  16656501 ttgaaagattatggcaaaaaaacatgaaggacgtgcagtgggaatagaccttggaacaacttattcatgtgttgctgtgtggatggaccgtcacaacaga 16656600  T
Q  252 gttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |  ||||| || ||||||||||| || |||| ||| |||||||||||||||||||||||| |||||||||||||| | |||||||||    
T  16656601 gcagagatcatacacaatgaccagggaaacagaacaacaccttcttttgttgctttcactcatgatcaaaggttgatcggtgatgct 16656687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 189 - 338
Target Start/End: Complemental strand, 43626484 - 43626335
Alignment:
Q  189 gtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaacca 288  Q
    |||||||| |||||||||||||||||||| ||  ||||||| |||||||||||  |||  ||||| |||||||| |||||||||||||| |||| ||| |    
T  43626484 gtgggaatagaccttggaacaacgtattcttgtattgctgtgtggcttgatgaaaacagaagagtagagattatccacaatgaccaaggaaacagaacta 43626385  T
Q  289 caccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||||||| |||||||| | || ||||||||| |||||||||||    
T  43626384 caccttcttttgtttctttcactaaggaccaaaggttgattggtgatgct 43626335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 189 - 338
Target Start/End: Original strand, 16661004 - 16661153
Alignment:
Q  189 gtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaacca 288  Q
    ||||| || ||||| |||||||| || || || |||||||||||| | || ||| | ||||||||||||||||| ||||| ||  ||||||||||||  |    
T  16661004 gtgggcatagacctaggaacaacatactcatgtgttgctgtttggttggaagagaaaaacagagttgagattatccacaacgatgaaggcaacaaaatta 16661103  T
Q  289 caccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||||||||||||||| ||||||| |||||||||||| |||| ||||    
T  16661104 caccttcttttgttgcttttactgatgctcaaaggttggtcggtggtgct 16661153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 12000436 - 12000348
Alignment:
Q  250 gagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||||| || |||||||| || |||||||||||||  |||||||||| |||||||||||||||  |||||||||| ||||||||||||    
T  12000436 gagttgaaatcattcacaacgatcaaggcaacaaaataacaccttcttgtgttgctttcactgaaaatcaaaggtttgttggtgatgct 12000348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 177 - 338
Target Start/End: Original strand, 12244329 - 12244490
Alignment:
Q  177 gaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaag 276  Q
    |||||| |||| |||||||| |||||||| ||||||||||| || ||||| || ||||  ||  | |||    | ||||| || |||||||| || || |    
T  12244329 gaaggacgtgccgtgggaatagaccttggtacaacgtattcatgtgttgcagtatggcaggaacaacactctcgtgttgaaatcattcacaacgatcagg 12244428  T
Q  277 gcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||| ||| |||||||||| ||||||||||||||| |||||||||||  |||||||||||    
T  12244429 gcaacagaacaacaccttcttgtgttgctttcactgaagatcaaaggtttattggtgatgct 12244490  T

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Target: chr2; HSP #6
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 192 - 335
Target Start/End: Complemental strand, 7543438 - 7543295
Alignment:
Q  192 ggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacac 291  Q
    ||||| |||||||| |||||||| || || ||||| || ||||  ||| | ||| |  ||||||| || |||||||| ||||||||||||| ||| ||||    
T  7543438 ggaatagaccttggcacaacgtactcttgtgttgcagtatggcaggatcaacactatcgagttgaaatcattcacaacgaccaaggcaacagaacaacac 7543339  T
Q  292 cttcttttgttgctttcactgatgatcaaaggttggttggtgat 335  Q
    ||||||||||||||||||| ||  |||| |||||| | ||||||    
T  7543338 cttcttttgttgctttcaccgaaaatcagaggttgatcggtgat 7543295  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 250 - 338
Target Start/End: Complemental strand, 12235901 - 12235813
Alignment:
Q  250 gagttgagattattcacaatgaccaaggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||||||| |||||||| || |||||||| | ||| || |||||||||||||||||||| ||  |||| |||||| |||||||||||    
T  12235901 gagttgagatcattcacaacgatcaaggcaatagaacaaccccttcttttgttgctttcaccgaaaatcagaggttgattggtgatgct 12235813  T

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Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 338
Target Start/End: Original strand, 12257855 - 12258001
Alignment:
Q  192 ggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaaggcaacaaaaccacac 291  Q
    ||||| |||||||| ||||||||||| ||||||||||||||||  ||  |  |     ||| |||||| |||||||| || ||||| |||| ||| || |    
T  12257855 ggaattgaccttggcacaacgtattcatgcgttgctgtttggcaggaacaatattgtcgagctgagatcattcacaacgatcaaggaaacagaacaacgc 12257954  T
Q  292 cttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    |||||| ||||||||| ||| | |||||||||||| |||||||||||    
T  12257955 cttcttgtgttgcttttactaaagatcaaaggttgattggtgatgct 12258001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 176 - 338
Target Start/End: Complemental strand, 14705640 - 14705478
Alignment:
Q  176 cgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattcacaatgaccaa 275  Q
    |||||||||||| |||||||| |||||||| |||||||| || || ||||| || ||||  ||  | ||  |  ||||||| || |||||||| || |||    
T  14705640 cgaaggatgtgctgtgggaatagaccttggtacaacgtactcatgtgttgcagtatggcaggaacaacattatcgagttgaaatcattcacaacgatcaa 14705541  T
Q  276 ggcaacaaaaccacaccttcttttgttgctttcactgatgatcaaaggttggttggtgatgct 338  Q
    ||||| | ||| || |||||||||||||||||||| ||  ||||  ||||| |||||||||||    
T  14705540 ggcaatagaacaactccttcttttgttgctttcaccgaaaatcagcggttgattggtgatgct 14705478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 166 - 298
Target Start/End: Complemental strand, 28911493 - 28911360
Alignment:
Q  166 caaaaaagtacgaaggatgtgcagtgggaatcgaccttggaacaacgtattcgtgcgttgctgtttggcttgatgagcacaacagagttgagattattca 265  Q
    ||||||| ||| |||||||||  |||||||| |||||||||| |||||||| | | |||| ||| ||||||||||| |||||  ||||| | ||||||||    
T  28911493 caaaaaaatacaaaggatgtgatgtgggaattgaccttggaataacgtatttgagtgttggtgtgtggcttgatgaacacaatggagttaatattattca 28911394  T
Q  266 caatgaccaaggcaac-aaaaccacaccttcttt 298  Q
    |||||| ||||||||| ||||| |||||||||||    
T  28911393 caatgatcaaggcaacaaaaactacaccttcttt 28911360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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