View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2363_low_12 (Length: 337)
Name: NF2363_low_12
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 37516763 - 37517087
Alignment:
| Q |
1 |
attgatacaaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagtta |
100 |
Q |
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| T |
37516763 |
attgatacaaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagtta |
37516862 |
T |
|
| Q |
101 |
tcaactataatcagcattttgttaataataatatatctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatg |
200 |
Q |
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| T |
37516863 |
tcaactataatcagcattttgttaataatgatatatctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatg |
37516962 |
T |
|
| Q |
201 |
aaccaattccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatctagcacaccactagaggaagaaatactttcacatttagtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
37516963 |
aaccaattccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatctagcacaccactagaggaagaaatactttcacatttag--t |
37517060 |
T |
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| Q |
301 |
atattttagaacttaactctgcctatg |
327 |
Q |
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||||||||||||||||||||||||||| |
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| T |
37517061 |
atattttagaacttaactctgcctatg |
37517087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 14842951 - 14843257
Alignment:
| Q |
1 |
attgatacaaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagtta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14842951 |
attgatacaaactctagcctatcaagaggttcaattaagactgcttgctaaatagacaaacatatattactcccagtgcatactggaaatgtatcagtta |
14843050 |
T |
|
| Q |
101 |
tcaactataatcagcattttgttaataataatatatctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatg |
200 |
Q |
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| T |
14843051 |
tcaactataatcagcatt------------------ctttgaaagtaatcataggtttaaaccatatcaagcatagttgaagtggtcataccatgtcatg |
14843132 |
T |
|
| Q |
201 |
aaccaattccttccaaaagcttaagccatgctgaagacatgtgactggttctatatatctagcacaccactagaggaagaaatactttcacatttagtat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
14843133 |
aaccaattccttccaaaagcttaagccatgctgaagacatgtgaatggttctatatatctagcacaccactagaggaagaaatactttcacatttag--t |
14843230 |
T |
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| Q |
301 |
atattttagaacttaactctgcctatg |
327 |
Q |
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|||||| |||||||||||||||||||| |
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| T |
14843231 |
atatttgagaacttaactctgcctatg |
14843257 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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