View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2363_low_2 (Length: 628)
Name: NF2363_low_2
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 588; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 588; E-Value: 0
Query Start/End: Original strand, 19 - 618
Target Start/End: Complemental strand, 39660052 - 39659453
Alignment:
| Q |
19 |
ctctatgataatgaggatcaatttgaatagcttccctacattcaaacacagcttcaagaagcctaccaagagcagttaaagcagcgcttctattacttct |
118 |
Q |
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| T |
39660052 |
ctctatgataatgaggatcaatttgaatagcttccctacattcaaacacagcttcaagaagcctaccaagagcagttaaagcagcgcttctattacttct |
39659953 |
T |
|
| Q |
119 |
ataagaagccgtcttgggatcaattgcaatagctgcatcatacaaggataacgcctccgcgaatcttccattcttataatcctcattccccattattttc |
218 |
Q |
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| T |
39659952 |
ataagaagccgtcttgggatcaattgcaatagctgcatcatacaaggataacgcctccgcgaatcttccattcttataatcctcattccccattattttc |
39659853 |
T |
|
| Q |
219 |
aactgctctggatccattctagttgatatagccctacaaagtgaaccaccacctgatttttcttccttcaacttggtggatgattttgtttctttacgaa |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659852 |
aactgctctggatccattctagttgatatagccctacaaagtgaaccaccacctgatttttcttccttcaacttggtggatgattttgtttctttacgaa |
39659753 |
T |
|
| Q |
319 |
cactcgtcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatactggttataattatccattgcatttgaataactattattttt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39659752 |
cactcgtcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatactggttataattatccattgcatttgaataactattattttt |
39659653 |
T |
|
| Q |
419 |
atctccttgcctaagattccctaaatttccatacaacataacattgccagacgaagcacgaataagagtactacttcctttggatttttgatgatcattg |
518 |
Q |
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| T |
39659652 |
atctccttgcctaagattccctaaatttccatacaacataacattgccagacgaagcgcgaataagagtactacttcctttggatttttgatgatcattg |
39659553 |
T |
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| Q |
519 |
atcatgctttctaactcacctgaaataccaacagcttcttttggaaccctcctaccttgattaacatacccctgagtagttgatgaatttgaaacctttg |
618 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |
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| T |
39659552 |
atcatgctttctaactcacctgaaataccaacagcttcttttggaaccctcctaccttgattaacatacccctcagtagttgatgaatttaaaacctttg |
39659453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 224 - 618
Target Start/End: Original strand, 4285958 - 4286351
Alignment:
| Q |
224 |
ctctggatccattctagttgatatagccctacaaa--gtgaaccaccacctgatttttcttccttcaacttg------gtggatgattttgtttctttac |
315 |
Q |
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|||| |||||||||||||||||||||||||||||| |||||||||||||||| ||| |||| ||||||||| ||||||||||||||||||| || |
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| T |
4285958 |
ctctagatccattctagttgatatagccctacaaaaagtgaaccaccacctgaatttccttctttcaacttgttgttggtggatgattttgtttcttcac |
4286057 |
T |
|
| Q |
316 |
gaacactcgtcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatactggttataattatccattgcatttgaataactattatt |
415 |
Q |
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| T |
4286058 |
taacactcatcacattatttgtgtgtcctcctcttgcatttgaatttgcattttcaaaatacttgttataattatccattgcatttgaataactattatc |
4286157 |
T |
|
| Q |
416 |
tttatctccttgcctaagattccctaaatttccatacaacataacattgccagacgaagcacgaataagagtactacttcctttggatttttgatgatca |
515 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||| |||||| |||| |||||||| ||| ||||||| |
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| T |
4286158 |
tttatctccttgcctaagattccctaaatatccatacaacaaagcattgccagacgaagcgcgaata--------actt-ctttggatattttatgatca |
4286248 |
T |
|
| Q |
516 |
ttgatcatgctttctaactcacctgaaataccaacagcttcttttggaaccctcctaccttgattaacatacccctgagtagttgatgaatttgaaacct |
615 |
Q |
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|| ||||||||||||||||| || | ||||||||| ||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||||| |
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| T |
4286249 |
ttaatcatgctttctaactctcccgtgataccaacaacttctcttggaaccctcctaccttgattaacatacccatgggtagttgatgaatttgaaacct |
4286348 |
T |
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