View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2363_low_21 (Length: 242)
Name: NF2363_low_21
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_low_21 |
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Alignment Details
Target: chr1 (Bit Score: 199; Significance: 1e-108; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 45068912 - 45068686
Alignment:
| Q |
4 |
atgtcgaagaatataaatgttacaggtggttgtttttattttctgcatgcatagattaattactgttgtcttatgcaggttatttgtgtgatttctatag |
103 |
Q |
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| T |
45068912 |
atgtctaagaaaataaatgttacaggtggttgtttttattttctgtatgcatagattaattactgttgttttatgcaggttatttgtgtgatttctatag |
45068813 |
T |
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| Q |
104 |
ttctgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagt |
203 |
Q |
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| T |
45068812 |
ttttgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccatgcaatcaattgccgaaaacacaatgcagt |
45068713 |
T |
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| Q |
204 |
tttaacagattttggtggtgttggtga |
230 |
Q |
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| T |
45068712 |
tttaacagattttggtgctgttggtga |
45068686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 10 - 232
Target Start/End: Complemental strand, 45079666 - 45079445
Alignment:
| Q |
10 |
aagaatataaatgttacaggtggttgtttttattttctgcatgcatagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctga |
109 |
Q |
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| T |
45079666 |
aagaatataaacgttacatgtgattatttatattttctgcgtgc-tagacttataaccattgttttgtgcaggttattggtgtgatatctgtagttctga |
45079568 |
T |
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| Q |
110 |
tattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaac |
209 |
Q |
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| T |
45079567 |
tattgggatcactagcagaatgcagagtaccaagtagtattaaattgaacaactttgattatcctgcaatcaattgcagaaaacacagtgcagttttaac |
45079468 |
T |
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| Q |
210 |
agattttggtggtgttggtgatg |
232 |
Q |
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| T |
45079467 |
agattttggtgctgttggtgatg |
45079445 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 77 - 232
Target Start/End: Complemental strand, 45076476 - 45076321
Alignment:
| Q |
77 |
tgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaaattgaacagctttgactaccctgc |
176 |
Q |
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| T |
45076476 |
tgcaggttattggtgtgatctctgtacttctgatatttggttcattagcagaatgcaaagaaccaagtagtagtaaattgaagaactttgattatccagc |
45076377 |
T |
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| Q |
177 |
aatcaattgccgaaaacacaatgcagttttaacagattttggtggtgttggtgatg |
232 |
Q |
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| T |
45076376 |
tatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatg |
45076321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 53 - 232
Target Start/End: Complemental strand, 45083915 - 45083736
Alignment:
| Q |
53 |
catagattaattactgttgtcttatgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgcagagaaccaagtagtattaa |
152 |
Q |
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| T |
45083915 |
catagatttatcactattgttttgtgcaggttatacgtgtgatctctgtagttgtgatattgggaacactagcagaatgcagaataccaagtattagtaa |
45083816 |
T |
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| Q |
153 |
attgaacagctttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattttggtggtgttggtgatg |
232 |
Q |
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| T |
45083815 |
attgaataactttgattatccagctatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatg |
45083736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 34506185 - 34506117
Alignment:
| Q |
164 |
ttgactaccctgcaatcaattgccgaaaacacaatgcagttttaacagattttggtggtgttggtgatg |
232 |
Q |
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| T |
34506185 |
ttgattaccttgcaatcaattgcagaaaacacagtgcagttttgacagattttggtggtgttggtgatg |
34506117 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 77 - 133
Target Start/End: Complemental strand, 34506245 - 34506189
Alignment:
| Q |
77 |
tgcaggttatttgtgtgatttctatagttctgatattggtatcactagcagaatgca |
133 |
Q |
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| T |
34506245 |
tgcaggttatttgtgtgatttctatagttttgatatttggatcactagcagaatgca |
34506189 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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