View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2363_low_23 (Length: 217)

Name: NF2363_low_23
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2363_low_23
NF2363_low_23
[»] chr4 (3 HSPs)
chr4 (101-202)||(26634642-26634739)
chr4 (96-147)||(14518535-14518586)
chr4 (27-65)||(34667171-34667209)
[»] chr3 (1 HSPs)
chr3 (94-146)||(40417596-40417648)
[»] chr5 (3 HSPs)
chr5 (95-146)||(26449046-26449097)
chr5 (23-73)||(26449139-26449189)
chr5 (27-75)||(9198092-9198140)
[»] chr7 (1 HSPs)
chr7 (94-147)||(37970422-37970475)
[»] chr6 (1 HSPs)
chr6 (108-145)||(16599323-16599360)
[»] chr2 (2 HSPs)
chr2 (94-147)||(29463197-29463250)
chr2 (23-59)||(1529389-1529425)
[»] chr1 (2 HSPs)
chr1 (102-147)||(47668046-47668091)
chr1 (25-73)||(4075679-4075727)


Alignment Details
Target: chr4 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 26634642 - 26634739
Alignment:
Q  101 cttatcatatcatgtgtttggtgcatacttgttattgacatgataaattnnnnnnnnttagatacgcacatatccatccatctccatcgtccgtcccctt 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||    ||||||||||| |||||||||||||    
T  26634642 cttatcatatcatgtgtttggtgcatacttgttattgacatgataaattaaaaaaaattagatacgcacat----atccatctccaccgtccgtcccctt 26634737  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 147
Target Start/End: Complemental strand, 14518586 - 14518535
Alignment:
Q  96 attatcttatcatatcatgtgtttggtgcatacttgttattgacatgataaa 147  Q
    ||||| |||||||||||| ||||||||||| |||||||||| ||||||||||    
T  14518586 attattttatcatatcatatgtttggtgcacacttgttattcacatgataaa 14518535  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 65
Target Start/End: Complemental strand, 34667209 - 34667171
Alignment:
Q  27 aaaatggataaagataggatatgatggtgacaagataaa 65  Q
    ||||||||||||||||||||||||| |||||| ||||||    
T  34667209 aaaatggataaagataggatatgatagtgacatgataaa 34667171  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 94 - 146
Target Start/End: Complemental strand, 40417648 - 40417596
Alignment:
Q  94 gcattatcttatcatatcatgtgtttggtgcatacttgttattgacatgataa 146  Q
    ||||||| |||||||||||||||||||   |||| ||||||||||||||||||    
T  40417648 gcattattttatcatatcatgtgtttgacacatatttgttattgacatgataa 40417596  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 146
Target Start/End: Complemental strand, 26449097 - 26449046
Alignment:
Q  95 cattatcttatcatatcatgtgtttggtgcatacttgttattgacatgataa 146  Q
    |||||| ||||| ||||||||||||| |||| | ||||||||||||||||||    
T  26449097 cattattttatcctatcatgtgtttgttgcacatttgttattgacatgataa 26449046  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 23 - 73
Target Start/End: Complemental strand, 26449189 - 26449139
Alignment:
Q  23 ttagaaaatggataaagataggatatgatggtgacaagataaacacttatc 73  Q
    |||||||||||||||| ||| |||||||| |||||| |||| |||||||||    
T  26449189 ttagaaaatggataaaaatatgatatgatagtgacatgatagacacttatc 26449139  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 75
Target Start/End: Complemental strand, 9198140 - 9198092
Alignment:
Q  27 aaaatggataaagataggatatgatggtgacaagataaacacttatcat 75  Q
    |||||| |||||||||||||||||| | || |||||| |||||||||||    
T  9198140 aaaatgaataaagataggatatgatagggataagatagacacttatcat 9198092  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 37970475 - 37970422
Alignment:
Q  94 gcattatcttatcatatcatgtgtttggtgcatacttgttattgacatgataaa 147  Q
    ||||||| ||||| ||||||| |||||||||| ||||| ||| |||||||||||    
T  37970475 gcattattttatcctatcatgcgtttggtgcacacttgctatcgacatgataaa 37970422  T

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Target: chr6 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 108 - 145
Target Start/End: Complemental strand, 16599360 - 16599323
Alignment:
Q  108 tatcatgtgtttggtgcatacttgttattgacatgata 145  Q
    |||||||||||||||||| ||||| |||||||||||||    
T  16599360 tatcatgtgtttggtgcacacttgatattgacatgata 16599323  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 94 - 147
Target Start/End: Complemental strand, 29463250 - 29463197
Alignment:
Q  94 gcattatcttatcatatcatgtgtttggtgcatacttgttattgacatgataaa 147  Q
    ||||||| |||||||||||| |||||| | || ||||||||||||| |||||||    
T  29463250 gcattattttatcatatcatatgtttgatacacacttgttattgacgtgataaa 29463197  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 59
Target Start/End: Original strand, 1529389 - 1529425
Alignment:
Q  23 ttagaaaatggataaagataggatatgatggtgacaa 59  Q
    |||||||||||||||||||| |||||||| |||||||    
T  1529389 ttagaaaatggataaagatatgatatgatagtgacaa 1529425  T

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Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 102 - 147
Target Start/End: Original strand, 47668046 - 47668091
Alignment:
Q  102 ttatcatatcatgtgtttggtgcatacttgttattgacatgataaa 147  Q
    ||||||| ||||| |||||| |||||||||||| ||||||||||||    
T  47668046 ttatcatttcatgcgtttggagcatacttgttactgacatgataaa 47668091  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 73
Target Start/End: Original strand, 4075679 - 4075727
Alignment:
Q  25 agaaaatggataaagataggatatgatggtgacaagataaacacttatc 73  Q
    |||| ||||| || ||||||||||||| ||||||||||| |||||||||    
T  4075679 agaagatggacaaggataggatatgatagtgacaagatagacacttatc 4075727  T

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