View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2363_low_9 (Length: 364)
Name: NF2363_low_9
Description: NF2363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2363_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 18 - 353
Target Start/End: Original strand, 43370007 - 43370342
Alignment:
| Q |
18 |
atggaatgggtcatgaacatgacaagaaatctcataatttcatggaatctgaacctgaaagtattaaacttctaatttctgtctagctttcttgtaggca |
117 |
Q |
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| T |
43370007 |
atggaatggatcatgaacatgacaagaaatctcataatttcatggaatctgaacctgaaagtattaaacttctaatttctgtctagctttcctgtaggca |
43370106 |
T |
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| Q |
118 |
aaatacttgttccccgatgagctaaaagttggtgaactagtcaatgtgctgaaggagaagaaaattggtgttgttgcacatttttacatggatcctgaag |
217 |
Q |
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| T |
43370107 |
aaatacttgttccctgatgagttaaaagttggtgaactagtcaatgtgctgaaggagaagaaaattggtgttgttgcacatttttacatggatcctgaag |
43370206 |
T |
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| Q |
218 |
tccaaggcattttaacagctgctcagaagcagtggcctcatatccatatatctgattcactggtcatggcagattcagcagtcgaaatggcaaaagctgg |
317 |
Q |
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| T |
43370207 |
tccaaggcattttaacagctgctcagaagcagtggcctcatatccatatatctgattcactggtcatggcagattcagcagtcgaaatggcaaaagctgg |
43370306 |
T |
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| Q |
318 |
atgcaaattcatagcagtgctgggtgtggacttcat |
353 |
Q |
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| T |
43370307 |
atgcaaattcataacagtgctgggtgtggacttcat |
43370342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 21 - 160
Target Start/End: Original strand, 40605284 - 40605423
Alignment:
| Q |
21 |
gaatgggtcatgaacatgacaagaaatctcataatttcatggaatctgaacctgaaagtattaaacttctaatttctgtctagctttcttgtaggcaaaa |
120 |
Q |
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| T |
40605284 |
gaatggatcatgaacatgagaagaaatgcctcaatttcattgaatctggacctgaaagtattaaacttctaagttttgtctagctttcgtgtaggcaaaa |
40605383 |
T |
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| Q |
121 |
tacttgttccccgatgagctaaaagttggtgaactagtca |
160 |
Q |
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| T |
40605384 |
tacttgttccctaatgagctaaaagttggtgaactagtca |
40605423 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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