View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2364_high_9 (Length: 225)
Name: NF2364_high_9
Description: NF2364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2364_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 8 - 210
Target Start/End: Original strand, 26977230 - 26977432
Alignment:
| Q |
8 |
gtagcatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcg |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26977230 |
gtaggatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgca |
26977329 |
T |
|
| Q |
108 |
acaacgctcgcaggtattgaaaataagagctctgcccagttgtgtcccttttatgggataacagtaattcactgaggcataaatggtaaaagagcctacc |
207 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
26977330 |
acaacgctcgcaggtattgaaaataagagctctgcccagttgtgtcccttttatgggataacagtaattcactaaggcataaatggtaaaagagcctacc |
26977429 |
T |
|
| Q |
208 |
cat |
210 |
Q |
| |
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||| |
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|
| T |
26977430 |
cat |
26977432 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 8 - 208
Target Start/End: Complemental strand, 26990421 - 26990221
Alignment:
| Q |
8 |
gtagcatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcg |
107 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||| || || |||| |||||||| || |||||| | ||||||| |||||| || || |
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| T |
26990421 |
gtaggatagggaggaagtgcagcatcacatatctgtcttgctttttatcgggttagcatgtggctcggcgatgctttttttcacaaggttattaggcgca |
26990322 |
T |
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| Q |
108 |
acaacgctcgcaggtattgaaaataagagctctgcccagttgtgtcccttttatgggataacagtaattcactgaggcataaatggtaaaagagcctacc |
207 |
Q |
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||||||| ||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||||||||||| | ||||||||||||| |||||||||| |
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| T |
26990321 |
gcaacgctagcaggtattgaaaatgagagctctgtccagttgtgtcccttttttgggataatagtaattcactaatgcataaatggtaatagagcctacc |
26990222 |
T |
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| Q |
208 |
c |
208 |
Q |
| |
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| |
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|
| T |
26990221 |
c |
26990221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 8 - 129
Target Start/End: Complemental strand, 27004961 - 27004840
Alignment:
| Q |
8 |
gtagcatagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcg |
107 |
Q |
| |
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|||| |||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||||||||| |||||| | ||||||| |||||||||||| |
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| T |
27004961 |
gtaggatagggaggaagtgcagcatcacatatctgtcttgctttttattgggttagcatgtggcttggcgatgctttttttcacaaggttatttggtgca |
27004862 |
T |
|
| Q |
108 |
acaacgctcgcaggtattgaaa |
129 |
Q |
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|||||||||||||||||||||| |
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| T |
27004861 |
acaacgctcgcaggtattgaaa |
27004840 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 21 - 131
Target Start/End: Complemental strand, 26945418 - 26945308
Alignment:
| Q |
21 |
gaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcgacaacgctcgcag |
120 |
Q |
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|||||||||||||||||||||||||||||||| |||| || | |||||||| ||||||| |||||||| | |||||||||| | || ||| | | |
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| T |
26945418 |
gaagtgcagcatcacatatctgtcttgctttttgttgggttggcttgtggcttcatgatgcttttgttcacatggctatttggtgctgccacactcactg |
26945319 |
T |
|
| Q |
121 |
gtattgaaaat |
131 |
Q |
| |
|
||||||||||| |
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|
| T |
26945318 |
gtattgaaaat |
26945308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 132
Target Start/End: Complemental strand, 26953147 - 26953028
Alignment:
| Q |
13 |
atagggaggaagtgcagcatcacatatctgtcttgcttttcattggattagtatgtggcttggtgatgctactgttcacaatgttatttggtgcgacaac |
112 |
Q |
| |
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|||| ||||| |||||||||||| | ||| || ||||||| ||||| || | |||||||||| ||||||| ||| |||| |||||| ||||| |||| |
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| T |
26953147 |
atagagaggatgtgcagcatcacttgtctatcctgctttttattgggttggcatgtggcttgatgatgcttttgtctacaaagttattcggtgcagcaac |
26953048 |
T |
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| Q |
113 |
gctcgcaggtattgaaaata |
132 |
Q |
| |
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|| || ||||||||||||| |
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| T |
26953047 |
acttgccggtattgaaaata |
26953028 |
T |
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