View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2364_low_1 (Length: 469)
Name: NF2364_low_1
Description: NF2364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2364_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 435; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 1 - 451
Target Start/End: Complemental strand, 39560398 - 39559949
Alignment:
| Q |
1 |
acttgtattcgaatgcaacatagaccaaggcataaccaacggttatataatgagtttagactaggatcttacaaattgctgagtaaatatatataacaga |
100 |
Q |
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| T |
39560398 |
acttgtattcgaatgcaacatagaccaaggcataaccaacggttatataatgagtttagactaggatcttacaaattgctgagtaaatatatataacaga |
39560299 |
T |
|
| Q |
101 |
aaataacattaaagagtggcatgccaacacttttacccatccaatatagaaagccaaattaacctccattagagagcctcttgtaaagaaagaactccaa |
200 |
Q |
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| T |
39560298 |
aaata-cattaaagagtggcatgccaacacttttacccatccaatatagaaagccaaattaacctccattagagtgcctcttgtaaagaaagaactccaa |
39560200 |
T |
|
| Q |
201 |
tttgattatacatgttacattaattatcctgcaaaaggagatatgatcatggcgacattagttgtttgttaggcatttcaatatacccactccattaact |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39560199 |
tttgattatacatgttacattaattatcctgcaaaaggagatatgatcatggcgacattagttgtttgttaggcatttcaatatacccactccattaact |
39560100 |
T |
|
| Q |
301 |
cctcactctccaacataaattgagctaatgtgcataatactctaaacatgtaataagatattgaagatttcttctccccaacgtattttataaaacacgc |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39560099 |
cctcactctccaacataaattgagctaatgtgcataatactctaaacatgtaataagatattgaagatttcttctccccaacgtattttataaaacacgc |
39560000 |
T |
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| Q |
401 |
gatttgtttggattacacttttcaagcttgcaagaaaacaaacgtttttta |
451 |
Q |
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|
| T |
39559999 |
gatttgtttggattacacttttcaagcttgcaagaaaacaaacttttttta |
39559949 |
T |
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