View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2364_low_2 (Length: 391)
Name: NF2364_low_2
Description: NF2364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2364_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 15 - 378
Target Start/End: Original strand, 16467314 - 16467680
Alignment:
| Q |
15 |
aaaatattgagggtggcgaaaaaataagaataagcaataaaaacaataactaacttcgactactaataattgtagaaaatttagtttaataaaaataaaa |
114 |
Q |
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| T |
16467314 |
aaaatatcgagggtgacgaaaaaataacaataagcaataaaaacaataattaacttcgactactaataattgtagaaaatttagtttaataaaaataaaa |
16467413 |
T |
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| Q |
115 |
tactatatattcatctaaagaaaatacacatagaaatacagccacgaaagctatattattattcgaatatttatttgctaaaactct--taattttgtat |
212 |
Q |
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|||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| ||||||||||| |
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| T |
16467414 |
tactatatatccatcaaaagaaaatacacatagaaatacagccacgaaaattatattattattcgattatttatttgctaaaactcttctaattttgtat |
16467513 |
T |
|
| Q |
213 |
gaaatctcttcacgatatcatttt-gatataaatagtcaaaatttcctgcagaaaaattatatttctagttttatgaaacctgattttcactaacaattt |
311 |
Q |
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| T |
16467514 |
gaaatgtcttcacaatatcattttcgatataaatagtcaaaattttctgcagaaaaattatatttctagttttatgaaacctgattttcactaacattgt |
16467613 |
T |
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| Q |
312 |
gctcattttattatgaaacgacaataatggtcgacattgaatctgtgttgttttgaatgttgaaatt |
378 |
Q |
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| T |
16467614 |
gctcattttattatgaaacgacaataatggtcgacattgagcctgggttgttttgaatgttgaaatt |
16467680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 15 - 378
Target Start/End: Complemental strand, 35381982 - 35381612
Alignment:
| Q |
15 |
aaaatattgagggtggcgaaaaaataagaataagcaataaaaacaataactaacttcgactactaataattgtagaaaatttagtttaataaaaataaaa |
114 |
Q |
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| T |
35381982 |
aaaatatcgaggggggc-aaaaaataacaataagcaataaatacaataactaactttgattactaataattacagaaaatttagtttaatataaataaaa |
35381884 |
T |
|
| Q |
115 |
ta--ctatatattcatctaaagaaaatacacatagaaatacagccacgaaagctatattattattcgaatatttatttgctaaaactctt----aatttt |
208 |
Q |
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|| |||||||| | | |||||||||||||||||||||||| ||| ||| ||||| ||||||||| ||||||||||||||||||||| | ||| |
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| T |
35381883 |
tatactatatatcccacagaagaaaatacacatagaaatacagtcacaaaaattatataattattcgattatttatttgctaaaactcttttctatcttt |
35381784 |
T |
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| Q |
209 |
gtatgaaatctcttcacgatatcatttt-gatataaatagtcaaaatttcctgcagaaaaattatatttctagttttatgaaacctgattttcact-aac |
306 |
Q |
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| T |
35381783 |
ttatgaaatgtcttcacaatatcatttttgatataaatagtaaaaaatttcagcagaaaaatcatatttttagttttatgaaaccttattctcacttaac |
35381684 |
T |
|
| Q |
307 |
aatttgctcattttattatgaaacgacaataatggtcgacattgaatctgtgttgttttgaatgttgaaatt |
378 |
Q |
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| | |||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35381683 |
attgtgctcattttattatgaaacgataataatggtcgacattgagcttgtgttgttttgaatgttgaaatt |
35381612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 116; Significance: 7e-59; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 15 - 202
Target Start/End: Complemental strand, 41433875 - 41433689
Alignment:
| Q |
15 |
aaaatattgagggtggcgaaaaaataagaataagcaataaaaacaataactaacttcgactactaataattgtagaaaatttagtttaataaaaataaaa |
114 |
Q |
| |
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||||||| ||||| ||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41433875 |
aaaatatcgaggggggcgaaaaa-taacaataagcaataaaaacaataactaactttgactactaataattgtagaaaatttagtttaataaaaataaaa |
41433777 |
T |
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| Q |
115 |
tactatatattcatctaaagaaaatacacatagaaatacagccacgaaagctatattattattcgaatatttatttgctaaaactctt |
202 |
Q |
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|||||||||| |||| ||||||||||||||||| |||||| | | ||| |||||| ||||||| ||||||||||||||||||||| |
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| T |
41433776 |
tactatatatccatcaaaagaaaatacacatagtaatacaatcgcaaaaattatattgatattcgattatttatttgctaaaactctt |
41433689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 278 - 378
Target Start/End: Complemental strand, 41433169 - 41433070
Alignment:
| Q |
278 |
tagttttatgaaacctgattttcactaacaatttgctcattttattatgaaacgacaataatggtcgacattgaatctgtgttgttttgaatgttgaaat |
377 |
Q |
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|||||||||||||| | ||||||||||||| | |||||| |||||||||||| || |||||||||||||||||| ||| ||||||||||||||||||||| |
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| T |
41433169 |
tagttttatgaaactt-attttcactaacattgtgctcactttattatgaaatgataataatggtcgacattgagtctatgttgttttgaatgttgaaat |
41433071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 244 - 284
Target Start/End: Complemental strand, 41433235 - 41433195
Alignment:
| Q |
244 |
atagtcaaaatttcctgcagaaaaattatatttctagtttt |
284 |
Q |
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| T |
41433235 |
atagtcaaaattttcagcagaaaaattatatttctagtttt |
41433195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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