View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2364_low_4 (Length: 351)
Name: NF2364_low_4
Description: NF2364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2364_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 318; Significance: 1e-179; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 1 - 345
Target Start/End: Complemental strand, 2252425 - 2252080
Alignment:
| Q |
1 |
cgaaagaggaagttgaaattggaaatgcaaattgaagagtgtagaagaaacaaacgtagaagtagaaagagaggtgtagtagtaaataaatgattgtact |
100 |
Q |
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||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2252425 |
cgaaaaaggaagttgaaattggaaatgcaaattgaagagagtagaagaaacaaacgtagaagtagaaagagaggtgtagtagtaaataaatgattgtact |
2252326 |
T |
|
| Q |
101 |
aaccgtttcggttgttagcagtgatacagacgcgggatcaaccatacggtgtcgtcgtgctctatgtcaagtagtgtagtacggtctatctctttttcaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2252325 |
aaccgtttcggttgttagcagtgatacagacgcgggatcaaccatacggtgtcgtcgtgctctatgtcaagtagtgtagtacggtctatctctttttcaa |
2252226 |
T |
|
| Q |
201 |
ttggtgggtccacgttttttaaatctaacccccttcttctggtctagttctagatagattggtggttggttggtaaatcaactaactttttctatctgcc |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
2252225 |
ttggtgggtccacgttttttaaatctaacccccttcttctagtctagttctagatagattggtggttagttggtaaatcaactaactttttctatctgcc |
2252126 |
T |
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| Q |
301 |
ctcctctctcattaaaaatcaaatgcccttgtccat-attcttcga |
345 |
Q |
| |
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||||||||||||||||||||||||||||| |||||| ||||||||| |
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| T |
2252125 |
ctcctctctcattaaaaatcaaatgccctggtccataattcttcga |
2252080 |
T |
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