View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2364_low_6 (Length: 337)

Name: NF2364_low_6
Description: NF2364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2364_low_6
NF2364_low_6
[»] chr8 (2 HSPs)
chr8 (242-308)||(26574026-26574092)
chr8 (225-307)||(26573813-26573895)
[»] chr5 (2 HSPs)
chr5 (229-310)||(38273944-38274025)
chr5 (60-96)||(38277336-38277372)
[»] chr3 (1 HSPs)
chr3 (277-306)||(35756369-35756398)


Alignment Details
Target: chr8 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 242 - 308
Target Start/End: Complemental strand, 26574092 - 26574026
Alignment:
Q  242 tttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaac 308  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||    
T  26574092 tttgaaatgtgagttgagtttgatcaagactatgtaaacacaatttggattttataatccaaaaaac 26574026  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 225 - 307
Target Start/End: Complemental strand, 26573895 - 26573813
Alignment:
Q  225 attttagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaa 307  Q
    |||||||||||||||  ||||||||||||| ||||||| || || |||||||||||| | || | ||| ||||||| ||||||    
T  26573895 attttagtgatttataatttgaaatgtgagctgaatttaattaaaactgtgtaaacaaagttcgaattatataatctaaaaaa 26573813  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 310
Target Start/End: Complemental strand, 38274025 - 38273944
Alignment:
Q  229 tagtgatttatggtttgaaatgtgagttgaatttgatcaagactgtgtaaacacaatttggattttataatccaaaaaacgt 310  Q
    |||||||||||  |||| |||||| ||| ||||||||||  |||||| ||||||| || ||| ||| ||||| |||||||||    
T  38274025 tagtgatttataatttggaatgtgggttaaatttgatcataactgtgaaaacacagttcggactttttaatcaaaaaaacgt 38273944  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 38277372 - 38277336
Alignment:
Q  60 ttggtgttcttgctttagcttccattgttattgtggt 96  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  38277372 ttggtgttcttgctttagcttccgttgttgttgtggt 38277336  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 277 - 306
Target Start/End: Complemental strand, 35756398 - 35756369
Alignment:
Q  277 aaacacaatttggattttataatccaaaaa 306  Q
    ||||||||||||||||||||||||||||||    
T  35756398 aaacacaatttggattttataatccaaaaa 35756369  T

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