View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2364_low_9 (Length: 270)

Name: NF2364_low_9

Description: NF2364

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF2364_low_9

[»] chr8 (5 HSPs)

Alignment Details

Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 5)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 237; E-Value: 1e-131

Query Start/End: Original strand, 5 - 270

Target Start/End: Complemental strand, 2498978 - 2498713

Alignment:

Q	5	atgaacattattgaaagtataattactcttaagcttccacaaggttccaatgatgttctgctaaaaaatttatacttgtcttgtgatccattcatgagga	104	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2498978	atgaacattattgaaagtataattactcttaagcttccacaaggttccaatgatgttctgctaaaaaatttatacttgtcttgtgatccattcatgagga	2498879	T

Q	105	atctcatgaacaaaccacaaggagctcccattaatcctcttgcatacacccctcaatctgtaagttaaagcttttgtgaatagcccttttgagtatatgt	204	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2498878	atctcatgaacaaaccacaaggagctcccattaatcctcttgcatacacccctcaatctgtaagttaaagcttttgtgaatagcccttttgagtatatgt	2498779	T

Q	205	caaatttgatccttaaagttggnnnnnnnatgtgtaaattaatctgctgactgcacggatcaactt	270	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	2498778	caaatttgatccttaaagttgttttttttatgtgtaaattagtctgctgactgcacggatcaactt	2498713	T

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Target: chr8; HSP #2

Raw Score: 49; E-Value: 4e-19

Query Start/End: Original strand, 5 - 116

Target Start/End: Complemental strand, 2519315 - 2519201

Alignment:

Q	5	atgaacattattgaaagtataattactcttaagcttccacaaggttccaatgatgttct---gctaaaaaatttatacttgtcttgtgatccattcatga	101	Q
		\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\| \|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|
T	2519315	atgaacatcattgacagtaccataactctcaagcttccacaagcttccaatgatgttcttctgctcaaaaatctctacttgtcttgtgatccttacatga	2519216	T

Q	102	ggaatctcatgaaca	116	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|
T	2519215	ggaatcttatgaaca	2519201	T

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Target: chr8; HSP #3

Raw Score: 39; E-Value: 0.0000000000004

Query Start/End: Original strand, 29 - 102

Target Start/End: Original strand, 2430899 - 2430975

Alignment:

Q	29	actcttaagcttccacaaggttccaatgatgtt---ctgctaaaaaatttatacttgtcttgtgatccattcatgag	102	Q
		\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|
T	2430899	actctcaagcttccacaaggttcaaatgatgttgttctgctaaaaaatctgtacttgtcttgtgatccttacatgag	2430975	T

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Target: chr8; HSP #4

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 35 - 102

Target Start/End: Original strand, 2434485 - 2434555

Alignment:

Q	35	aagcttccacaaggttccaatgat---gttctgctaaaaaatttatacttgtcttgtgatccattcatgag	102	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|
T	2434485	aagcttccacaaggttccaatgatgtggttttgctcaaaaatctgtacttgtcttgtgatccttacatgag	2434555	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5

Raw Score: 32; E-Value: 0.000000006

Query Start/End: Original strand, 15 - 93

Target Start/End: Original strand, 1457924 - 1458005

Alignment:

Q	15	ttgaaagtataattactcttaagcttccacaaggttccaatga---tgttctgctaaaaaatttatacttgtcttgtgatcc	93	Q
		\|\|\|\| \|\|\|\| \|\|\|\|\| \|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\| \|\| \|\|\|\|\|\|\|\|
T	1457924	ttgatagtacaattattctcaaccttccacaaggttccaatgatgttgttctgctaaaaaatctctacttatcctgtgatcc	1458005	T

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