View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_high_15 (Length: 250)
Name: NF2365_high_15
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_high_15 |
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| [»] chr1 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 11 - 250
Target Start/End: Complemental strand, 14261528 - 14261284
Alignment:
| Q |
11 |
cagagagcgtgacaatagaattttgttatcaatttagttatttagataatttatctaagtagttttgtcttctctttgtgtttgtttgggatacatattt |
110 |
Q |
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| T |
14261528 |
cagagagcgtgacattagaattttgttatcaatttagttatttagataatttatctaagtagttttgtcttctctttgtgtttgtttgggatacatattt |
14261429 |
T |
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| Q |
111 |
tgggtttgctctcttgttgttaaaattaccatagttggtgatggtttgatgttt-----attcctagagatttaagaagacattgattgtaattattatt |
205 |
Q |
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| T |
14261428 |
tgggtttgctctcttgttgttaaaattaccatagttggtgatggtttgatgttttgtcaattcctagagatttaagaagacattgattgtaactattatt |
14261329 |
T |
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| Q |
206 |
ttgatagttgaattttttgcccgacttatgggaaagttttagaat |
250 |
Q |
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| T |
14261328 |
ttgatagttgaattttttgcccgacttatgggaaatttttagaat |
14261284 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 45 - 210
Target Start/End: Complemental strand, 17920762 - 17920592
Alignment:
| Q |
45 |
tagttatttagataatttatctaagtagttttgtcttctctttgtgtttgtttgggatacatattttgggtttgctctcttgttgttaaaattaccatag |
144 |
Q |
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| T |
17920762 |
tagttacttagataatttttctaagtagttttgtcttttgtttgtgtttgtttgggatatctatttagagtttgctctctagttgttagaatcatcatag |
17920663 |
T |
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| Q |
145 |
ttgg-tgatggtttga----tgtttattcctagagatttaagaagacattgattgtaattattattttgat |
210 |
Q |
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| T |
17920662 |
ttggatgattatttgatgattgttagttcctagagatttatgaagacattgattgtaaccattactttgat |
17920592 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 224
Target Start/End: Original strand, 35905635 - 35905770
Alignment:
| Q |
93 |
tgtttgggatacatattttgggtttgctctcttgttgttaaaattaccatagttggtgatggtttgatgttt----attcctagagatttaagaagacat |
188 |
Q |
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| T |
35905635 |
tgtttgggatatctatttagggtttgctctctggttgttagaatcaccatagttggtgattatttgatgattttcagtttctagagatttaggaagacat |
35905734 |
T |
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| Q |
189 |
tgattgtaattattattttgatagttgaattttttg |
224 |
Q |
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| T |
35905735 |
tgattgtaaccattattgtgatagtggaagtttttg |
35905770 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 67 - 224
Target Start/End: Complemental strand, 2764817 - 2764656
Alignment:
| Q |
67 |
aagtagttttgtcttctctttgtgtttgtttgggatacatattttgggtttgctctcttgttgttaaaattaccatagttggtgatggtttga----tgt |
162 |
Q |
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| T |
2764817 |
aagtagttttgtcttctctttgtgtctgtttggtatacctatttagagtttgctctctggttgttagaatcaccataattggtgattatttgatgactgt |
2764718 |
T |
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| Q |
163 |
ttattcctagagatttaagaagacattgattgtaattattattttgatagttgaattttttg |
224 |
Q |
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| T |
2764717 |
cggttcctagagatttaggaagacgttgattgtaaccattattatgatagtggaagtttttg |
2764656 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 189
Target Start/End: Complemental strand, 36966963 - 36966805
Alignment:
| Q |
31 |
ttttgttatcaatttagttatttagataatttatctaagtagttttgtcttctctttgtgtttgtttgggatacatattttgggtttgctctcttgttgt |
130 |
Q |
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| T |
36966963 |
ttttgttatctagtttgatacttagataatttttctaagtagttttgtcttctctttgtgtctgtttgggatatctatttagggtttg----ttggttgt |
36966868 |
T |
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| Q |
131 |
taaaattaccatagttggtgatggtttgatgttt----attcctagagatttaagaagacatt |
189 |
Q |
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| T |
36966867 |
tagaatcatcatagttggtgattatttgatgattgtcggttcctagagatttaagaagacatt |
36966805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 148
Target Start/End: Original strand, 2281442 - 2281535
Alignment:
| Q |
55 |
gataatttatctaagtagttttgtcttctctttgtgtttgtttgggatacatattttgggtttgctctcttgttgttaaaattaccatagttgg |
148 |
Q |
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| T |
2281442 |
gataatttttctaagtagtttggtcttttctttgtgtctgtttcagatacctatttagggtttgctctctggctgttagaatcatcatagttgg |
2281535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 80 - 224
Target Start/End: Original strand, 55280281 - 55280429
Alignment:
| Q |
80 |
ttctctttgtgtttgtttgggatacatattttgggtttgctctcttgttgttaaaattaccatagttggtgatggtttgatgtttat----tcctagaga |
175 |
Q |
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| T |
55280281 |
ttctctttgtgtctggttgggatacctatttaatgtctgttctttggttgttagaatcaccatagttggtgattatttgatgattgtcagttcctagaga |
55280380 |
T |
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| Q |
176 |
tttaagaagacattgattgtaattattattttgatagttgaattttttg |
224 |
Q |
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|||| ||||||||||||||||| |||||| || |||| ||| |||||| |
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| T |
55280381 |
tttatgaagacattgattgtaaccattattgtggtagtggaagtttttg |
55280429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 52 - 124
Target Start/End: Original strand, 73085 - 73157
Alignment:
| Q |
52 |
ttagataatttatctaagtagttttgtcttctctttgtgtttgtttgggatacatattttgggtttgctctct |
124 |
Q |
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| T |
73085 |
ttagataatttttctaattggttttgtcttctctttgtgtctatttgggatacctttttaggatttgctctct |
73157 |
T |
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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 112 - 213
Target Start/End: Original strand, 18939629 - 18939735
Alignment:
| Q |
112 |
gggtttgctctcttgttgttaaaattaccatagtt-ggtgatggtttgatgttt----attcctagagatttaagaagacattgattgtaattattattt |
206 |
Q |
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| T |
18939629 |
gggttttctccctggttgttagaatcaccatagttgggtgattatttgatgtttgtcagttcctagagatttaggaagacattgattgtaaccattattc |
18939728 |
T |
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| Q |
207 |
tgatagt |
213 |
Q |
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| T |
18939729 |
tgatagt |
18939735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 40488483 - 40488519
Alignment:
| Q |
51 |
tttagataatttatctaagtagttttgtcttctcttt |
87 |
Q |
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| T |
40488483 |
tttagataatttttctaagtagttttgtcttctcttt |
40488519 |
T |
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