View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2365_high_16 (Length: 246)

Name: NF2365_high_16
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2365_high_16
NF2365_high_16
[»] chr7 (2 HSPs)
chr7 (104-232)||(46833128-46833256)
chr7 (160-204)||(47438155-47438199)
[»] chr2 (9 HSPs)
chr2 (132-208)||(16290774-16290853)
chr2 (132-201)||(1648039-1648111)
chr2 (132-194)||(37520622-37520687)
chr2 (132-208)||(8561055-8561134)
chr2 (143-189)||(23766907-23766956)
chr2 (143-189)||(23796100-23796149)
chr2 (143-194)||(11992949-11993003)
chr2 (132-202)||(45329632-45329705)
chr2 (160-208)||(42010628-42010676)
[»] chr1 (13 HSPs)
chr1 (132-208)||(49350458-49350537)
chr1 (132-200)||(4001877-4001948)
chr1 (132-208)||(52921010-52921089)
chr1 (132-195)||(32079336-32079402)
chr1 (133-195)||(6985613-6985676)
chr1 (144-208)||(49527422-49527489)
chr1 (132-202)||(8670798-8670871)
chr1 (132-189)||(9599939-9599999)
chr1 (157-195)||(6039645-6039683)
chr1 (166-204)||(27694531-27694569)
chr1 (160-201)||(15424503-15424544)
chr1 (132-196)||(51850792-51850859)
chr1 (159-195)||(52463087-52463123)
[»] chr5 (6 HSPs)
chr5 (132-201)||(2078532-2078604)
chr5 (132-202)||(11069356-11069429)
chr5 (132-208)||(32489132-32489211)
chr5 (157-189)||(39668785-39668817)
chr5 (143-202)||(3292672-3292734)
chr5 (161-189)||(6520940-6520968)
[»] scaffold0001 (1 HSPs)
scaffold0001 (144-208)||(440127-440194)
[»] chr8 (5 HSPs)
chr8 (132-208)||(15218268-15218347)
chr8 (132-189)||(16008443-16008503)
chr8 (160-208)||(3801895-3801943)
chr8 (132-187)||(4061840-4061898)
chr8 (162-202)||(27579026-27579066)
[»] chr3 (6 HSPs)
chr3 (132-208)||(51450751-51450830)
chr3 (132-208)||(52136346-52136425)
chr3 (132-202)||(31566252-31566325)
chr3 (132-188)||(9256290-9256349)
chr3 (132-195)||(7023178-7023244)
chr3 (156-202)||(33123868-33123914)
[»] scaffold0279 (1 HSPs)
scaffold0279 (160-208)||(18445-18493)
[»] chr6 (2 HSPs)
chr6 (132-202)||(20430560-20430633)
chr6 (132-208)||(6079606-6079685)
[»] chr4 (2 HSPs)
chr4 (157-202)||(27453157-27453202)
chr4 (144-194)||(38475065-38475118)
[»] scaffold0024 (1 HSPs)
scaffold0024 (157-208)||(48244-48295)


Alignment Details
Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 104 - 232
Target Start/End: Complemental strand, 46833256 - 46833128
Alignment:
Q  104 aaaattttattccataatataaatttaaaaaaggaaagagttgtgttaggcctcagccaacgtaaaactttgtcgaatctctatgatatggatcaaatat 203  Q
    |||||||| |||||||||||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||||||||| ||||| |||||||    
T  46833256 aaaattttgttccataatataaatttaaaaaaggagagggttgtgttaggcctcaaccaacgtaaaactttgtcgaatctctatgacatggaccaaatat 46833157  T
Q  204 gaaatttaaattttaaaagataatttaaa 232  Q
     |||| |||||||||||| ||||||||||    
T  46833156 aaaatataaattttaaaaaataatttaaa 46833128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 47438155 - 47438199
Alignment:
Q  160 ccaacgtaaaactttgtcgaatctctatgatatggatcaaatatg 204  Q
    |||||||||||||| || |||| ||||||||||||| ||||||||    
T  47438155 ccaacgtaaaacttcgttgaatttctatgatatggaccaaatatg 47438199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 50; Significance: 1e-19; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 16290774 - 16290853
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    |||||||||| |||||||||||||||   |||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  16290774 aaaaggaaagggttgtgttaggcctcgatagccaacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaat 16290853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 201
Target Start/End: Original strand, 1648039 - 1648111
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaat 201  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||||||||||||||| ||||| |||||    
T  1648039 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggaccaaat 1648111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 132 - 194
Target Start/End: Original strand, 37520622 - 37520687
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatgg 194  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||||||||||||||| ||||    
T  37520622 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgg 37520687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 8561134 - 8561055
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || |||||||||||||||   ||||||||||||||||||| ||||| |||||| ||||| |||||| |||||    
T  8561134 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatccctatgacatggaccaaatacgaaat 8561055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 23766956 - 23766907
Alignment:
Q  143 gttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatga 189  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||    
T  23766956 gttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatga 23766907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 23796149 - 23796100
Alignment:
Q  143 gttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatga 189  Q
    |||||||||||||||   ||||||||||||||||||||||||||||||||    
T  23796149 gttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatga 23796100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 11992949 - 11993003
Alignment:
Q  143 gttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatgg 194  Q
    |||||||||||||||   ||||||| |||||||||||||||||||||||| ||||    
T  11992949 gttgtgttaggcctcgacagccaacataaaactttgtcgaatctctatgacatgg 11993003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 45329705 - 45329632
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||| || ||||||||||| |||   ||||||||||||||||| |||||||||||||| |  |||||||||    
T  45329705 aaaaggagagggttgtgttaggtctcgacagccaacgtaaaactttatcgaatctctatgacaaagatcaaata 45329632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 208
Target Start/End: Complemental strand, 42010676 - 42010628
Alignment:
Q  160 ccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||||||||||||||||||| |||||| ||| | |||||| |||||    
T  42010676 ccaacgtaaaactttgtcgaatccctatgacatgtaccaaatacgaaat 42010628  T

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Target: chr1 (Bit Score: 46; Significance: 2e-17; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 49350537 - 49350458
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  49350537 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaat 49350458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 200
Target Start/End: Original strand, 4001877 - 4001948
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaa 200  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||||||||||||||| ||||| ||||    
T  4001877 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatggaccaaa 4001948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 52921010 - 52921089
Alignment:
Q  132 aaaaggaaagagttgtgttaggcct---cagccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || ||||||||||||||   |||||||| |||||||||||||||||||||||| ||||| |||||| |||||    
T  52921010 aaaaggagagggttgtgttaggccttgacagccaacataaaactttgtcgaatctctatgacatggaccaaatacgaaat 52921089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 32079336 - 32079402
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatgga 195  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||||||||||||||| |||||    
T  32079336 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatctctatgacatgga 32079402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 133 - 195
Target Start/End: Complemental strand, 6985676 - 6985613
Alignment:
Q  133 aaaggaaagagttgtgttaggcct-cagccaacgtaaaactttgtcgaatctctatgatatgga 195  Q
    |||||| || |||||||||||||  ||||||||||||||||||||||||||||||||| |||||    
T  6985676 aaaggagagggttgtgttaggccgacagccaacgtaaaactttgtcgaatctctatgacatgga 6985613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Complemental strand, 49527489 - 49527422
Alignment:
Q  144 ttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||||||||||   ||||||||||||||||||| |||||||||||| ||||| |||||| |||||    
T  49527489 ttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatggaccaaatacgaaat 49527422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 8670871 - 8670798
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||| || |||||||||||||||   |||||| ||||||||||||||||||||||| | ||||| ||||||    
T  8670871 aaaaggagagggttgtgttaggcctcgacagccaatgtaaaactttgtcgaatctctataacatggaccaaata 8670798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Original strand, 9599939 - 9599999
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatga 189  Q
    ||||||| || |||||||||||||||   ||||||||||||||||||||| ||||||||||    
T  9599939 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcggatctctatga 9599999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 157 - 195
Target Start/End: Original strand, 6039645 - 6039683
Alignment:
Q  157 cagccaacgtaaaactttgtcgaatctctatgatatgga 195  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  6039645 cagccaacgtaaaactttgttgaatctctatgacatgga 6039683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 27694569 - 27694531
Alignment:
Q  166 taaaactttgtcgaatctctatgatatggatcaaatatg 204  Q
    |||||||||||||||||| ||||| ||||||||||||||    
T  27694569 taaaactttgtcgaatctttatgacatggatcaaatatg 27694531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 160 - 201
Target Start/End: Complemental strand, 15424544 - 15424503
Alignment:
Q  160 ccaacgtaaaactttgtcgaatctctatgatatggatcaaat 201  Q
    |||||||||||||||||| ||||||||| | |||||||||||    
T  15424544 ccaacgtaaaactttgtcaaatctctataacatggatcaaat 15424503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 132 - 196
Target Start/End: Original strand, 51850792 - 51850859
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggat 196  Q
    ||||||| || |||||||||||||||   | ||||| |||||||| ||||||||||||||| ||||||    
T  51850792 aaaaggagagggttgtgttaggcctcgacatccaacataaaacttcgtcgaatctctatgacatggat 51850859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 159 - 195
Target Start/End: Complemental strand, 52463123 - 52463087
Alignment:
Q  159 gccaacgtaaaactttgtcgaatctctatgatatgga 195  Q
    |||||| |||||||||||||||||||||||| |||||    
T  52463123 gccaacttaaaactttgtcgaatctctatgacatgga 52463087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 132 - 201
Target Start/End: Complemental strand, 2078604 - 2078532
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaat 201  Q
    ||||||| || |||||||||||||||   |||||| ||||||||||||||||||||||||| ||||| |||||    
T  2078604 aaaaggagagggttgtgttaggcctcgacagccaaagtaaaactttgtcgaatctctatgacatggaccaaat 2078532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 11069429 - 11069356
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctcagc---caacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||| || |||||||||||||||| |   ||||| ||||||||||||||||||||||| ||||| ||||||    
T  11069429 aaaaggagagcgttgtgttaggcctcaacaaccaacgcaaaactttgtcgaatctctatgacatggaccaaata 11069356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 32489132 - 32489211
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || |||||||||| ||||   || |||||||||||||||||||||| |||||| ||||| ||||||| ||||    
T  32489132 aaaaggagagggttgtgttagacctcgacagtcaacgtaaaactttgtcgaatccctatgacatggaccaaatataaaat 32489211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 157 - 189
Target Start/End: Complemental strand, 39668817 - 39668785
Alignment:
Q  157 cagccaacgtaaaactttgtcgaatctctatga 189  Q
    |||||||||||||||||||||||||||||||||    
T  39668817 cagccaacgtaaaactttgtcgaatctctatga 39668785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 202
Target Start/End: Original strand, 3292672 - 3292734
Alignment:
Q  143 gttgtgttaggcctca---gccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||||||||||||   |||||| ||||||||||||||||| |||||| ||| | ||||||    
T  3292672 gttgtgttaggcctcaacagccaacataaaactttgtcgaatcactatgacatgaaccaaata 3292734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 161 - 189
Target Start/End: Original strand, 6520940 - 6520968
Alignment:
Q  161 caacgtaaaactttgtcgaatctctatga 189  Q
    |||||||||||||||||||||||||||||    
T  6520940 caacgtaaaactttgtcgaatctctatga 6520968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 208
Target Start/End: Original strand, 440127 - 440194
Alignment:
Q  144 ttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||||||||||   |||||||||||||||||||| ||||||||||| ||||| |||||| |||||    
T  440127 ttgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctatgacatggaccaaatacgaaat 440194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 15218347 - 15218268
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || ||||||||| |||||   || |||||||||| |||||||||||||||||| ||||| ||||||||||||    
T  15218347 aaaaggagagggttgtgttaagcctcgatagtcaacgtaaaattttgtcgaatctctatgacatggaccaaatatgaaat 15218268  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 132 - 189
Target Start/End: Complemental strand, 16008503 - 16008443
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatga 189  Q
    ||||||| || |||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  16008503 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatga 16008443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 3801895 - 3801943
Alignment:
Q  160 ccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||||||||||||| |||||||||||||||| ||||| || |||||    
T  3801895 ccaacgtaaaactttgttgaatctctatgatatgaatcaattacgaaat 3801943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 187
Target Start/End: Original strand, 4061840 - 4061898
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctat 187  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||| |||||||||    
T  4061840 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcaaatctctat 4061898  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 162 - 202
Target Start/End: Original strand, 27579026 - 27579066
Alignment:
Q  162 aacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||| ||||||||||||||| |||||| ||||||||||||    
T  27579026 aacgtgaaactttgtcgaatcgctatgacatggatcaaata 27579066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Complemental strand, 51450830 - 51450751
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || |||||||||||||||   |||||||||||||||||||||||| ||||||  ||||| |||||| |||||    
T  51450830 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgtcgaatatctatggcatggaccaaatacgaaat 51450751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 52136346 - 52136425
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || ||||||||||||||    |||||||||||||||||||||||||||||||| || || |||||| |||||    
T  52136346 aaaaggagagggttgtgttaggccttgatagccaacgtaaaactttgtcgaatctctatgacatagaccaaatacgaaat 52136425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 31566325 - 31566252
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||| || |||||||||||||||   |||||||||| |||||||| |||||||||||| ||||| ||||||    
T  31566325 aaaaggagagggttgtgttaggcctcgacagccaacgtagaactttgtagaatctctatgacatggaccaaata 31566252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 188
Target Start/End: Original strand, 9256290 - 9256349
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctca---gccaacgtaaaactttgtcgaatctctatg 188  Q
    ||||||| || ||||||||||||||||   |||||||||||| |||||||||||||||||    
T  9256290 aaaaggagagggttgtgttaggcctcaacagccaacgtaaaattttgtcgaatctctatg 9256349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 132 - 195
Target Start/End: Original strand, 7023178 - 7023244
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctca---gccaacgtaaaactttgtcgaatctctatgatatgga 195  Q
    ||||||| || ||||||||||||||||   |||||||||||||||| || ||||||||||| |||||    
T  7023178 aaaaggagagggttgtgttaggcctcaacagccaacgtaaaactttatcaaatctctatgacatgga 7023244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 202
Target Start/End: Complemental strand, 33123914 - 33123868
Alignment:
Q  156 tcagccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||||||||||||||||||||||| |||||| || || ||||||    
T  33123914 tcagccaacgtaaaactttgtcgaatccctatgacatcgaccaaata 33123868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0279 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0279
Description:

Target: scaffold0279; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 160 - 208
Target Start/End: Original strand, 18445 - 18493
Alignment:
Q  160 ccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    |||||||||||||||||||||||||||||| ||||| |||||| |||||    
T  18445 ccaacgtaaaactttgtcgaatctctatgacatggaccaaatacgaaat 18493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 20430633 - 20430560
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||| || |||||||||||||||   ||||||||||||||||||| |||||||||||| ||| | ||||||    
T  20430633 aaaaggagagggttgtgttaggcctcgacagccaacgtaaaactttgttgaatctctatgacatgaaccaaata 20430560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 208
Target Start/End: Original strand, 6079606 - 6079685
Alignment:
Q  132 aaaaggaaagagttgtgttaggcctc---agccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    ||||||| || |||| ||||||||||   || ||||||||||||||||||||||||||||| ||||| || ||| |||||    
T  6079606 aaaaggagagggttgcgttaggcctcgacagtcaacgtaaaactttgtcgaatctctatgacatggaccacatacgaaat 6079685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 157 - 202
Target Start/End: Complemental strand, 27453202 - 27453157
Alignment:
Q  157 cagccaacgtaaaactttgtcgaatctctatgatatggatcaaata 202  Q
    ||||||||||||||||||| ||||||||||||| ||||| ||||||    
T  27453202 cagccaacgtaaaactttgccgaatctctatgacatggaccaaata 27453157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 38475118 - 38475065
Alignment:
Q  144 ttgtgttaggcctca---gccaacgtaaaactttgtcgaatctctatgatatgg 194  Q
    |||||||||||||||   ||||||||||||| ||||||||||||||||| ||||    
T  38475118 ttgtgttaggcctcaatagccaacgtaaaacgttgtcgaatctctatgacatgg 38475065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 157 - 208
Target Start/End: Complemental strand, 48295 - 48244
Alignment:
Q  157 cagccaacgtaaaactttgtcgaatctctatgatatggatcaaatatgaaat 208  Q
    |||||||| || |||||| |||||||||||||| |||||||||||| |||||    
T  48295 cagccaacatataactttatcgaatctctatgacatggatcaaatacgaaat 48244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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