View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2365_high_2 (Length: 464)

Name: NF2365_high_2
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2365_high_2
NF2365_high_2
[»] chr8 (5 HSPs)
chr8 (19-450)||(17031479-17031910)
chr8 (19-450)||(17561915-17562346)
chr8 (134-446)||(17561232-17561546)
chr8 (134-446)||(17030796-17031110)
chr8 (205-253)||(19946648-19946696)
[»] chr2 (5 HSPs)
chr2 (309-450)||(13496383-13496517)
chr2 (353-450)||(12815344-12815445)
chr2 (133-251)||(12815113-12815229)
chr2 (198-251)||(13496284-13496335)
chr2 (310-348)||(12815268-12815306)
[»] scaffold0125 (1 HSPs)
scaffold0125 (353-450)||(18925-19022)
[»] chr3 (8 HSPs)
chr3 (353-446)||(13408097-13408190)
chr3 (326-450)||(7471456-7471577)
chr3 (133-251)||(7471326-7471442)
chr3 (353-450)||(13532202-13532303)
chr3 (133-251)||(13531971-13532087)
chr3 (133-241)||(13408308-13408414)
chr3 (310-348)||(13408228-13408266)
chr3 (310-348)||(13532126-13532164)
[»] chr6 (3 HSPs)
chr6 (353-450)||(10299964-10300065)
chr6 (133-248)||(10299733-10299846)
chr6 (310-348)||(10299888-10299926)
[»] scaffold0860 (3 HSPs)
scaffold0860 (133-251)||(1501-1617)
scaffold0860 (353-414)||(1732-1793)
scaffold0860 (310-348)||(1656-1694)
[»] chr4 (2 HSPs)
chr4 (355-450)||(3331083-3331178)
chr4 (139-255)||(3331275-3331391)
[»] chr5 (1 HSPs)
chr5 (127-192)||(38962116-38962181)


Alignment Details
Target: chr8 (Bit Score: 333; Significance: 0; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 17031910 - 17031479
Alignment:
Q  19 tctaagttttgtcgtaaaggtatcaatctccttatctatttactactattcggtctctacagagaaaaattgacgttccgtctctaaaatgatatatata 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  17031910 tctaagttttgtcgtaaaggtatcaatctccttctctatttactactattcggtctctacaaagaaaaattgacgtttcgtctctaaaatgatatatata 17031811  T
Q  119 nnnnnnnnataatttttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaaga 218  Q
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17031810 tttttt--ataatttttgactcaatattcccaatttttagtgccaaaataatgtttaacatattcattgtgtttgcaatatttaactctatctgtcaaga 17031713  T
Q  219 atgtcacaataatattttgatacacatcaagtttgaagtatagggacataaaagtaaactc--nnnnnnncattagcacataatttcaaaatataaaggt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||| |||||||||||||||    
T  17031712 atgtcacaataatattttgatacacatcaagtttgaagtatagggacataaaagtaaactcataaaaaaacattagcacgtaatatcaaaatataaaggt 17031613  T
Q  317 aaccaaaccaaagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagat 416  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17031612 aaccaaactaaagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagat 17031513  T
Q  417 actaaaataaaagcaaccaagctaaagttcatct 450  Q
    ||||||||||||||||  ||||||||||||||||    
T  17031512 actaaaataaaagcaattaagctaaagttcatct 17031479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 19 - 450
Target Start/End: Complemental strand, 17562346 - 17561915
Alignment:
Q  19 tctaagttttgtcgtaaaggtatcaatctccttatctatttactactattcggtctctacagagaaaaattgacgttccgtctctaaaatgatatatata 118  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||    
T  17562346 tctaagttttgtcgtaaaggtatcaatctccttctctatttactactattcggtctctacaaagaaaaattgacgtttcgtctctaaaatgatatatata 17562247  T
Q  119 nnnnnnnnataatttttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaaga 218  Q
            ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  17562246 tttttt--ataatttttgactcaatattcccaatttttagtgccaaaataatgtttaacatattcattgtgtttgcaatatttaactctatctgtcaaga 17562149  T
Q  219 atgtcacaataatattttgatacacatcaagtttgaagtatagggacataaaagtaaactc--nnnnnnncattagcacataatttcaaaatataaaggt 316  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||| |||| |||||||||||||||    
T  17562148 atgtcacaataatattttgatacacatcaagtttgaagtatagggacataaaagtaaactcataaaaaaacattagcacgtaatatcaaaatataaaggt 17562049  T
Q  317 aaccaaaccaaagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagat 416  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17562048 aaccaaactaaagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagat 17561949  T
Q  417 actaaaataaaagcaaccaagctaaagttcatct 450  Q
    ||||||||||||||||  ||||||||||||||||    
T  17561948 actaaaataaaagcaattaagctaaagttcatct 17561915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 134 - 446
Target Start/End: Original strand, 17561232 - 17561546
Alignment:
Q  134 ttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataatat 233  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||    
T  17561232 ttgactcaatattcctaatttttagtgccaaaataatgtttaacatattcattgtgtttgctatatttaactctaactctcaggaatgtcataataatat 17561331  T
Q  234 tttg--atacacatcaagtttgaagtatagggacataaaagtaaactc-----nnnnnnncattagcacataatttcaaaatataaaggtaaccaaacca 326  Q
    ||||  |||||||||||| |||| |  |||||||||||||||  | ||            ||| ||||  |||| |||||||||||||||||| |||| |    
T  17561332 tttgatatacacatcaagcttgacg--tagggacataaaagtccattcataaaaacaaaacatcagcatgtaatatcaaaatataaaggtaactaaacta 17561429  T
Q  327 aagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataa 426  Q
    ||||||||||||||||||||   || ||||| |||||||||| |||| ||||||||||||||||||||  |||||||||||| |||||| || |||||||    
T  17561430 aagtttatcatcaatccacc---tagtagttgccaatataaagttgtctaaaatataaaagatcatgacgtctttgatctaacaaaagacacaaaaataa 17561526  T
Q  427 aagcaaccaagctaaagttc 446  Q
    ||||||||||||||||||||    
T  17561527 aagcaaccaagctaaagttc 17561546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 134 - 446
Target Start/End: Original strand, 17030796 - 17031110
Alignment:
Q  134 ttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataatat 233  Q
    ||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| ||| |||||||| ||||||||    
T  17030796 ttgactcaatattcctaatttttagtgccaaaataatgtttaacatattcattgtgtttgctatatttaactctaactctcaggaatgtcataataatat 17030895  T
Q  234 tttg--atacacatcaagtttgaagtatagggacataaaagtaaactc-----nnnnnnncattagcacataatttcaaaatataaaggtaaccaaacca 326  Q
    ||||  |||||||||||| |||| |  |||||||||||||||  | ||            ||| ||||  |||| |||||||||||||||||| || | |    
T  17030896 tttgatatacacatcaagcttgacg--tagggacataaaagtccattcataaaaacaaaacatcagcatgtaatatcaaaatataaaggtaactaancta 17030993  T
Q  327 aagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataa 426  Q
    ||||||||||||||||||||   || ||||| |||||||||| |||| ||||||||||||||||||||  |||||||||||| || ||| || |||||||    
T  17030994 aagtttatcatcaatccacc---tagtagttgccaatataaagttgtctaaaatataaaagatcatgacgtctttgatctaacaanagacacaaaaataa 17031090  T
Q  427 aagcaaccaagctaaagttc 446  Q
    ||||||||||||||||||||    
T  17031091 aagcaaccaagctaaagttc 17031110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 205 - 253
Target Start/End: Complemental strand, 19946696 - 19946648
Alignment:
Q  205 tctaactgtcaagaatgtcacaataatattttgatacacatcaagtttg 253  Q
    ||||||| |||||||||||||||| ||||||||||| ||||||| ||||    
T  19946696 tctaactatcaagaatgtcacaattatattttgataaacatcaaatttg 19946648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 9e-37; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 9e-37
Query Start/End: Original strand, 309 - 450
Target Start/End: Original strand, 13496383 - 13496517
Alignment:
Q  309 ataaaggtaaccaaaccaaagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaa 408  Q
    |||||||||||||||| |||||||||||||||||||||||||   ||||||||| ||||| |||| |||||||||||||| |||||||| ||||||||||    
T  13496383 ataaaggtaaccaaactaaagtttatcatcaatccacctaat---agttaccaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaa 13496479  T
Q  409 taaaagatactaaaataaaagcaaccaagctaaagttcatct 450  Q
     ||||||||| |    ||||||||||||||||||||||||||    
T  13496480 caaaagatacca----aaaagcaaccaagctaaagttcatct 13496517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 12815344 - 12815445
Alignment:
Q  353 tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaacc----aagctaaagttcat 448  Q
    ||||||| || ||||| |||| |||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||    ||||||||||||||    
T  12815344 tagttactaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaattaagctaaagttcat 12815443  T
Q  449 ct 450  Q
    ||    
T  12815444 ct 12815445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 12815113 - 12815229
Alignment:
Q  133 tttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataata 232  Q
    ||||||||||||||  || | |||||| | |||| ||||||||| ||||| ||||| ||||| | ||||||||| |||| ||||||||||  ||||||||    
T  12815113 tttgactcaatattgtcactgtttagtgctaaaacaatgtttaaaatatttattgtatttgctacatttaactcaaactttcaagaatgt--caataata 12815210  T
Q  233 ttttgatacacatcaagtt 251  Q
    ||||||||| |||||||||    
T  12815211 ttttgatacccatcaagtt 12815229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 251
Target Start/End: Original strand, 13496284 - 13496335
Alignment:
Q  198 atttaactctaactgtcaagaatgtcacaataatattttgatacacatcaagtt 251  Q
    |||||||||||||| ||||||||||  ||||||||||||||||||||| |||||    
T  13496284 atttaactctaactctcaagaatgt--caataatattttgatacacattaagtt 13496335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 12815268 - 12815306
Alignment:
Q  310 taaaggtaaccaaaccaaagtttatcatcaatccaccta 348  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  12815268 taaaggtaactaaactaaagtttatcatcaatccaccta 12815306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0125 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: scaffold0125
Description:

Target: scaffold0125; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 18925 - 19022
Alignment:
Q  353 tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaaccaagctaaagttcatct 450  Q
    |||||||||| ||||| |||| |||||||||||||| |||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||||||||    
T  18925 tagttaccaacataaagttgtctaaaatataaaagaccatgatatgttttatctaacaaaagataccaaaataaaagcaaccaagctaaagttcatct 19022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 353 - 446
Target Start/End: Complemental strand, 13408190 - 13408097
Alignment:
Q  353 tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaaccaagctaaagttc 446  Q
    |||||||||| ||||| |||| |||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||||||||||||||    
T  13408190 tagttaccaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaagctaaagttc 13408097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 326 - 450
Target Start/End: Original strand, 7471456 - 7471577
Alignment:
Q  326 aaagtttatcatcaatccacctaataatagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaata 425  Q
    |||||||| ||||||||||| || ||   |||||||| ||||| |||| |||||| |||||||  ||||||| |||||||||| ||||||||| ||||||    
T  7471456 aaagtttaccatcaatccacttagta---gttaccaacataaagttgtctaaaatctaaaagacaatgatatgtttgatctaacaaaagataccaaaata 7471552  T
Q  426 aaagcaaccaagctaaagttcatct 450  Q
    |||||||||||||||||||||||||    
T  7471553 aaagcaaccaagctaaagttcatct 7471577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 7471326 - 7471442
Alignment:
Q  133 tttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataata 232  Q
    ||||||||||||||| || | |||||| | |||| ||||||||| ||||||||||||||||| | ||||||||| |||| ||||||||||  ||||||||    
T  7471326 tttgactcaatattctcattgtttagtgctaaaacaatgtttaaaatattcattgtgtttgctacatttaactcaaactttcaagaatgt--caataata 7471423  T
Q  233 ttttgatacacatcaagtt 251  Q
    ||||||||| |||||||||    
T  7471424 ttttgatacccatcaagtt 7471442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 13532202 - 13532303
Alignment:
Q  353 tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaacc----aagctaaagttcat 448  Q
    ||||||| || ||||| |||| |||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||    ||||||||||||||    
T  13532202 tagttactaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaattaagctaaagttcat 13532301  T
Q  449 ct 450  Q
    ||    
T  13532302 ct 13532303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 13531971 - 13532087
Alignment:
Q  133 tttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataata 232  Q
    ||||||||||||||  || | |||| | | |||| ||||||||| ||||| ||||||||||| | ||||||||| |||| ||||||||||  ||||||||    
T  13531971 tttgactcaatattgtcactgtttattgctaaaacaatgtttaaaatatttattgtgtttgctacatttaactcaaactttcaagaatgt--caataata 13532068  T
Q  233 ttttgatacacatcaagtt 251  Q
    ||||||||| |||||||||    
T  13532069 ttttgatacccatcaagtt 13532087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 13408414 - 13408308
Alignment:
Q  133 tttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataata 232  Q
    ||||||||||||||  || | |||||| | |||| ||||||||| |||||||| |||| ||| | ||||||||| |||| |||||||||   ||||||||    
T  13408414 tttgactcaatattgtcactgtttagtgctaaaacaatgtttaaaatattcatcgtgtatgctagatttaactcaaactttcaagaatg--ccaataata 13408317  T
Q  233 ttttgatac 241  Q
    |||||||||    
T  13408316 ttttgatac 13408308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Complemental strand, 13408266 - 13408228
Alignment:
Q  310 taaaggtaaccaaaccaaagtttatcatcaatccaccta 348  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  13408266 taaaggtaactaaactaaagtttatcatcaatccaccta 13408228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 13532126 - 13532164
Alignment:
Q  310 taaaggtaaccaaaccaaagtttatcatcaatccaccta 348  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  13532126 taaaggtaactaaactaaagtttatcatcaatccaccta 13532164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 53; Significance: 3e-21; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 353 - 450
Target Start/End: Original strand, 10299964 - 10300065
Alignment:
Q  353 tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaacc----aagctaaagttcat 448  Q
    ||||||| || ||||| |||| |||||||||||||| |||||||| |||||||||| ||||||||| |||||||||||||||    ||||||||||||||    
T  10299964 tagttacaaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaacaaaagataccaaaataaaagcaaccaattaagctaaagttcat 10300063  T
Q  449 ct 450  Q
    ||    
T  10300064 ct 10300065  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 133 - 248
Target Start/End: Original strand, 10299733 - 10299846
Alignment:
Q  133 tttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataata 232  Q
    ||||||||||||||| || | ||||||   |||| ||||||||| | ||||||||||||||| | ||||||||| |||| ||||||||||  ||||||||    
T  10299733 tttgactcaatattctcactatttagtgttaaaacaatgtttaaaaaattcattgtgtttgctacatttaactcaaactttcaagaatgt--caataata 10299830  T
Q  233 ttttgatacacatcaa 248  Q
    ||||||||| ||||||    
T  10299831 ttttgatacccatcaa 10299846  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 10299888 - 10299926
Alignment:
Q  310 taaaggtaaccaaaccaaagtttatcatcaatccaccta 348  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  10299888 taaaggtaactaaactaaagtttatcatcaatccaccta 10299926  T

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Target: scaffold0860 (Bit Score: 52; Significance: 1e-20; HSPs: 3)
Name: scaffold0860
Description:

Target: scaffold0860; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 133 - 251
Target Start/End: Original strand, 1501 - 1617
Alignment:
Q  133 tttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactctaactgtcaagaatgtcacaataata 232  Q
    ||||||||||||||  || | |||||| | |||| ||||||||| ||||| ||||||||||| | ||||||||| |||| ||||||||||  ||||||||    
T  1501 tttgactcaatattgtcactgtttagtgctaaaacaatgtttaaaatatttattgtgtttgctacatttaactcaaactttcaagaatgt--caataata 1598  T
Q  233 ttttgatacacatcaagtt 251  Q
    ||||||||| |||||||||    
T  1599 ttttgatacccatcaagtt 1617  T

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Target: scaffold0860; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 353 - 414
Target Start/End: Original strand, 1732 - 1793
Alignment:
Q  353 tagttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaag 414  Q
    ||||||| || ||||| |||| |||||||||||||| |||||||| |||||||||| |||||    
T  1732 tagttactaacataaagttgtctaaaatataaaagaccatgatatgtttgatctaacaaaag 1793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0860; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 310 - 348
Target Start/End: Original strand, 1656 - 1694
Alignment:
Q  310 taaaggtaaccaaaccaaagtttatcatcaatccaccta 348  Q
    |||||||||| |||| |||||||||||||||||||||||    
T  1656 taaaggtaactaaactaaagtttatcatcaatccaccta 1694  T

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Target: chr4 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 355 - 450
Target Start/End: Complemental strand, 3331178 - 3331083
Alignment:
Q  355 gttaccaatataaatttgtgtaaaatataaaagatcatgatatctttgatctaataaaagatactaaaataaaagcaaccaagctaaagttcatct 450  Q
    ||||||| |||||| || | |||||| |||||||||||||||| |||||||||| ||||||||  |||||||| | ||||||||||||| ||||||    
T  3331178 gttaccagtataaagttatctaaaatttaaaagatcatgatatgtttgatctaacaaaagatatcaaaataaaggtaaccaagctaaagatcatct 3331083  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 139 - 255
Target Start/End: Complemental strand, 3331391 - 3331275
Alignment:
Q  139 tcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgtttgcaatatttaactct-aactgtcaagaatgtcacaataatattttg 237  Q
    |||||||||| ||| |||||| | |||| ||||| ||| |||| |||| | ||||| | |||||||| | |||| |||||||  ||||||||||||||||    
T  3331391 tcaatattcctaatgtttagtgctaaaacaatgtataaaatat-cattatatttgctacatttaacttttaactctcaagaacatcacaataatattttg 3331293  T
Q  238 atacacatcaagtttgaa 255  Q
    ||||||||||||||||||    
T  3331292 atacacatcaagtttgaa 3331275  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 127 - 192
Target Start/End: Original strand, 38962116 - 38962181
Alignment:
Q  127 ataatttttgactcaatattcccaatttttagttccaaaataatgtttaacatattcattgtgttt 192  Q
    |||| ||||| ||||||||||| ||| |||||| | |||||||||||||| ||||||||| |||||    
T  38962116 ataaattttgcctcaatattccaaatatttagtgctaaaataatgtttaaaatattcattttgttt 38962181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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