View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2365_low_1 (Length: 546)

Name: NF2365_low_1
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2365_low_1
NF2365_low_1
[»] chr1 (15 HSPs)
chr1 (15-531)||(6521636-6522152)
chr1 (15-527)||(6512488-6513000)
chr1 (281-527)||(6516887-6517133)
chr1 (299-527)||(6506575-6506809)
chr1 (15-211)||(6506903-6507099)
chr1 (15-194)||(6517220-6517399)
chr1 (102-219)||(47778041-47778158)
chr1 (122-219)||(47788183-47788280)
chr1 (15-187)||(47760133-47760299)
chr1 (446-520)||(47778382-47778456)
chr1 (366-520)||(47788424-47788578)
chr1 (122-215)||(47781969-47782062)
chr1 (366-406)||(47759914-47759954)
chr1 (110-187)||(6523733-6523810)
chr1 (366-406)||(47712999-47713039)
[»] scaffold0341 (4 HSPs)
scaffold0341 (299-527)||(600-834)
scaffold0341 (299-527)||(8253-8487)
scaffold0341 (15-211)||(928-1124)
scaffold0341 (15-211)||(8581-8778)
[»] chr7 (1 HSPs)
chr7 (18-163)||(722161-722305)
[»] chr5 (3 HSPs)
chr5 (16-136)||(28856512-28856632)
chr5 (84-134)||(28831318-28831368)
chr5 (16-136)||(28861789-28861909)


Alignment Details
Target: chr1 (Bit Score: 478; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 15 - 531
Target Start/End: Original strand, 6521636 - 6522152
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521636 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 6521735  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 214  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  6521736 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgttactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 6521835  T
Q  215 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac 314  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||||||||||||||||| ||||||||||||||||    
T  6521836 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaatttttttttggatagtttaagaaatagagctgcatcaggggac 6521935  T
Q  315 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat 414  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6521936 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaagtaataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat 6522035  T
Q  415 tatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagata 514  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6522036 tatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagata 6522135  T
Q  515 tgaaaccaattcattct 531  Q
    |||||||||||||||||    
T  6522136 tgaaaccaattcattct 6522152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 15 - 527
Target Start/End: Complemental strand, 6513000 - 6512488
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||| | || |||||| ||||  |||||||||||| |||||    
T  6513000 gacaaagtaaacgctattggactttgtagaggagatgtcaaacccaatgattgtcaaaattgcataaagaattcatctgtctttctaacacaactttgtc 6512901  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgctta 214  Q
    |||| |||||||| || ||||| |||||  | || ||   |||||||||||| |||||| ||||||||||||| ||||| || |||| | |||||  |||    
T  6512900 aaaatcgaaaagaggctattggttggtatgatgaagatacatgcatgttgcgttactcataccgttcaatattcggtctgaatgaaactagaccttttta 6512801  T
Q  215 ttttgtttggaatacaaacaacgcaacaaatgaggttgagtttaacaaagtggtgaannnnnnnnnggatagtttaagaaataaagctgcatcaggggac 314  Q
    ||| |  |||| |   ||||| || |||||||| | ||| ||| | |||||  ||||         ||||| ||||||||||| |||| ||||||| ||     
T  6512800 tttaggatggagtttgaacaatgctacaaatgaagatgaatttgataaagtactgaaaaatttattggataatttaagaaatagagcttcatcaggtgat 6512701  T
Q  315 agtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacat 414  Q
    |||||||||||||||||||| ||||||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||| |||    
T  6512700 agtgaccttaaatatgctgttggaagtgatgaggttggtcaaaataataatcaaactatatatgctcttgttcaatgcacacctgatttgtctaaatcat 6512601  T
Q  415 tatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagata 514  Q
    | || ||||||||||||||  |||||||||||| |||  |||  ||||||||||| ||||| |||||||||||||||||||| |||||| ||||||||||    
T  6512600 tgtgcgatgattgtttggtaaaatctatcaaagcaatcccaagatgttgtaacaacaggttgggtgctagaattgttagaccaagttgttatttgagata 6512501  T
Q  515 tgaaaccaattca 527  Q
    ||||||| |||||    
T  6512500 tgaaaccgattca 6512488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 281 - 527
Target Start/End: Complemental strand, 6517133 - 6516887
Alignment:
Q  281 ggatagtttaagaaataaagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggt 380  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  6517133 ggataatttaagaaatagagctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataatcaaaccatatatggt 6517034  T
Q  381 cttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaacaataggttaggtg 480  Q
    || | |||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| |||||  |||  ||||||||||| ||| |  |||    
T  6517033 ctagctcaatgcacacctgatttgtttaaaacattttgtgatgattgtttggttcaatctatcaatgaaatcgcaatatgttgtaacaacaggatgagtg 6516934  T
Q  481 ctagaattgttagacccagttgtaatttgagatatgaaaccaattca 527  Q
    ||||| ||||||||||||||||| ||||||||||||||||| |||||    
T  6516933 ctagagttgttagacccagttgttatttgagatatgaaaccgattca 6516887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 299 - 527
Target Start/End: Complemental strand, 6506809 - 6506575
Alignment:
Q  299 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 398  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  6506809 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 6506710  T
Q  399 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta 492  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||  ||||||||||| ||     ||||||| |||||| |||| || |||    
T  6506709 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 6506610  T
Q  493 gacccagttgtaatttgagatatgaaaccaattca 527  Q
    ||||||||||| |||||||||||||||||||||||    
T  6506609 gacccagttgttatttgagatatgaaaccaattca 6506575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 6507099 - 6506903
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  6507099 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 6507000  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 211  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  6506999 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 6506903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 88; E-Value: 5e-42
Query Start/End: Original strand, 15 - 194
Target Start/End: Complemental strand, 6517399 - 6517220
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| ||||||||||| ||||||||| | ||||  |||||||||| |||||| ||| |||||||||||||  |||||||||||| |||||    
T  6517399 gacaaagtaaacgcaattggactatgcagaggagatttaaaaccgaatgattgtcgaaattgtctccaaaattcaactgtgtttctaacacaacgttgtc 6517300  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctc 194  Q
    ||||  ||||| |||||||||| |||||| | |||||   |||||||||||| ||||||| |||||||||||||||||||    
T  6517299 aaaatagaaaacaagcaattggttggtacgatgatgatagatgcatgttgcgttactcaagccgttcaatatttggtctc 6517220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 102 - 219
Target Start/End: Original strand, 47778041 - 47778158
Alignment:
Q  102 acacaacattgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaa 201  Q
    ||||||| ||||| ||||  ||| ||||||||||| |||||| | |||||| ||||||||||||| |||||| |||||||||||||| | ||||| ||||    
T  47778041 acacaactttgtccaaacaaaaaggaagcaattggttggtacgaggatgaaaaatgcatgttgcgttactcagaccgttcaatatttagcctcaatgaaa 47778140  T
Q  202 ttggacctgcttattttg 219  Q
    |||||||||| |||||||    
T  47778141 ttggacctgcatattttg 47778158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 122 - 219
Target Start/End: Original strand, 47788183 - 47788280
Alignment:
Q  122 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttattttg 219  Q
    |||||||||||||||||||||| | |||||  |||| ||||| || || ||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  47788183 aaaagaagcaattggatggtacgaggatgagaaatgtatgttacgttattcagaccgttcaataatgggtctaaacgaaattggacctgcttattttg 47788280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 47760299 - 47760133
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| |||||||||||||| |||| | | | ||| |  | ||| |||||  ||||||  |||||||| ||| ||| |||||    
T  47760299 gacaaagtaaacgccattggactctgtagaggagatgttaaacccgacgtttgccgcagttgtctcaacgattcaagagttcttctcacaaaactttgtc 47760200  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 187  Q
     ||||| ||||||||||||||| ||||      ||||  | ||||||||||| ||||||||||| ||||||||    
T  47760199 caaaccaaaaagaagcaattggttggt------atgataactgcatgttgcgttactcaaaccgatcaatatt 47760133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 446 - 520
Target Start/End: Original strand, 47778382 - 47778456
Alignment:
Q  446 agaaatttcaaattgttgtaacaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac 520  Q
    |||||||||||  |||||||| |||||| | |||||||||||||||||||| || ||||||||||| | ||||||    
T  47778382 agaaatttcaagatgttgtaaaaataggattggtgctagaattgttagacctagctgtaatttgaggtttgaaac 47778456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 366 - 520
Target Start/End: Original strand, 47788424 - 47788578
Alignment:
Q  366 caaaccatatatggtcttgttcaatgcacacctgatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgta 465  Q
    ||||| ||||||||||||||||| || || ||||| ||||||    ||   ||||||||||||||| ||||||| ||    ||| ||||||  |||||||    
T  47788424 caaacaatatatggtcttgttcagtgtactcctgacttgtctggtccacagtgtgatgattgtttgcttcaatccattgctgaagtttcaagatgttgta 47788523  T
Q  466 acaataggttaggtgctagaattgttagacccagttgtaatttgagatatgaaac 520  Q
     ||||||| | |||||||||||| ||||||| || ||||||||||| | ||||||    
T  47788524 gcaataggattggtgctagaattattagaccaagctgtaatttgaggtttgaaac 47788578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 122 - 215
Target Start/End: Original strand, 47781969 - 47782062
Alignment:
Q  122 aaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgcttat 215  Q
    |||||||||||||||||||||| | |||||  |||||||||| || || ||| ||||||| ||||| || || ||||||||||| || ||||||    
T  47781969 aaaagaagcaattggatggtacgaggatgagaaatgcatgttacgttattcagaccgttctatattaggcctaaacgaaattgggccagcttat 47782062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 47759954 - 47759914
Alignment:
Q  366 caaaccatatatggtcttgttcaatgcacacctgatttgtc 406  Q
    ||||||||||||||||||||||| |||||||||||||||||    
T  47759954 caaaccatatatggtcttgttcagtgcacacctgatttgtc 47759914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 110 - 187
Target Start/End: Original strand, 6523733 - 6523810
Alignment:
Q  110 ttgtcaaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatt 187  Q
    ||||| ||||| ||||||||||||||| |||||  | |||||| ||||||||||||| || ||| ||||||| |||||    
T  6523733 ttgtccaaaccaaaaagaagcaattggttggtatgaagatgaaaaatgcatgttgcgttattcagaccgttccatatt 6523810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 47713039 - 47712999
Alignment:
Q  366 caaaccatatatggtcttgttcaatgcacacctgatttgtc 406  Q
    |||||||||||||||||||| || || ||||||||||||||    
T  47713039 caaaccatatatggtcttgtgcagtgtacacctgatttgtc 47712999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341 (Bit Score: 131; Significance: 1e-67; HSPs: 4)
Name: scaffold0341
Description:

Target: scaffold0341; HSP #1
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 299 - 527
Target Start/End: Complemental strand, 834 - 600
Alignment:
Q  299 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 398  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  834 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 735  T
Q  399 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta 492  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||  ||||||||||| ||     ||||||| |||||| |||| || |||    
T  734 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 635  T
Q  493 gacccagttgtaatttgagatatgaaaccaattca 527  Q
    ||||||||||| |||||||||||||||||||||||    
T  634 gacccagttgttatttgagatatgaaaccaattca 600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 299 - 527
Target Start/End: Complemental strand, 8487 - 8253
Alignment:
Q  299 agctgcatcaggggacagtgaccttaaatatgctgtaggaagtgatgaggttggtccaaataataaccaaaccatatatggtcttgttcaatgcacacct 398  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||| | |||||||||||||||| |||||||||| || |||||||||||||||||||    
T  8487 agctgcatcgggggaaagtgaccttaaatatgctgtaggaagtgatgtgattggtccaaataataatcaaaccatatttgctcttgttcaatgcacacct 8388  T
Q  399 gatttgtctaaaacattatgtgatgattgtttggttcaatctatcaaagaaatttcaaattgttgtaac-----aataggt-taggtgctagaattgtta 492  Q
    ||||||||| ||||||| |||||||| ||||||| | ||||||||||||||||  ||||||||||| ||     ||||||| |||||| |||| || |||    
T  8387 gatttgtctgaaacattgtgtgatgaatgtttggataaatctatcaaagaaatcccaaattgttgtgacaatagaataggtataggtggtagatttctta 8288  T
Q  493 gacccagttgtaatttgagatatgaaaccaattca 527  Q
    ||||||||||| |||||||||||||||||||||||    
T  8287 gacccagttgttatttgagatatgaaaccaattca 8253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #3
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 1124 - 928
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  1124 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 1025  T
Q  115 aaaaccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 211  Q
    |||| |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  1024 aaaatcgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0341; HSP #4
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 15 - 211
Target Start/End: Complemental strand, 8778 - 8581
Alignment:
Q  15 gacaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtc 114  Q
    |||||||||||||| |||||||| ||||||||||||||||||| | |||||||||||||||||||| ||||||||||||  ||||||||||||| |||||    
T  8778 gacaaagtaaacgctattggactgtgtagaggagatgtcaaacccgatgattgtcaaaattgcctccaaaattcaactgcccttctaacacaactttgtc 8679  T
Q  115 aaaa-ccgaaaagaagcaattggatggtacaacgatgaagaatgcatgttgcgctactcaaaccgttcaatatttggtctcaacgaaattggacctgc 211  Q
    ||||  |||||||||||||||||||||||| |||||||| ||||||||||||| | |||| |||||| |||||||||| |||| ||||| ||||||||    
T  8678 aaaatacgaaaagaagcaattggatggtacgacgatgaaaaatgcatgttgcgttcctcacaccgtttaatatttggtatcaatgaaatgggacctgc 8581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 78; Significance: 4e-36; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 18 - 163
Target Start/End: Original strand, 722161 - 722305
Alignment:
Q  18 aaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtcaaa 117  Q
    |||||||||| | |||||||||||||||||||||| || |||||||||||||||| ||||| |||| |||||| ||| ||||||||||||||||   |||    
T  722161 aaagtaaacgtggttggactatgtagaggagatgttaagctcaatgattgtcaaa-ttgccacaaatattcaattgtccttctaacacaacatttataaa 722259  T
Q  118 accgaaaagaagcaattggatggtacaacgatgaagaatgcatgtt 163  Q
    ||||||||||||||||||||| |||| | |||||| ||||||||||    
T  722260 accgaaaagaagcaattggattgtacgatgatgaaaaatgcatgtt 722305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28856632 - 28856512
Alignment:
Q  16 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 115  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| ||||||     
T  28856632 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaattgtcc 28856533  T
Q  116 aaaccgaaaagaagcaattgg 136  Q
    ||||  |||||||||||||||    
T  28856532 aaacaaaaaagaagcaattgg 28856512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 84 - 134
Target Start/End: Complemental strand, 28831368 - 28831318
Alignment:
Q  84 aattcaactgttcttctaacacaacattgtcaaaaccgaaaagaagcaatt 134  Q
    |||||||  ||||||||||||||| |||||| ||||| |||||||||||||    
T  28831368 aattcaagagttcttctaacacaaaattgtccaaaccaaaaagaagcaatt 28831318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 136
Target Start/End: Complemental strand, 28861909 - 28861789
Alignment:
Q  16 acaaagtaaacgcgattggactatgtagaggagatgtcaaactcaatgattgtcaaaattgcctcaaaaattcaactgttcttctaacacaacattgtca 115  Q
    |||||||| |||| || ||| |||| ||||||||||| || |  |||||||| |  | ||| || || |||||||  ||||||||||||||| | ||||     
T  28861909 acaaagtatacgccataggattatgcagaggagatgttaatccaaatgattgccgcagttgtcttaacaattcaagagttcttctaacacaaaaatgtcc 28861810  T
Q  116 aaaccgaaaagaagcaattgg 136  Q
     |||| |||||||||||||||    
T  28861809 taaccaaaaagaagcaattgg 28861789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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