View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_low_11 (Length: 292)
Name: NF2365_low_11
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 3 - 284
Target Start/End: Original strand, 26122561 - 26122821
Alignment:
| Q |
3 |
tcttcttgtccccacatatctggaatccatactcttccacccatttcaactctatgtctcttcaacctctctcttccactttcttcttcctcaacaatag |
102 |
Q |
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| T |
26122561 |
tcttcttgtccccacatatctggaatccatactcttccacccatttcaactctatgtctcttcaacctctctcttccactttcttcttcctcaacaatag |
26122660 |
T |
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| Q |
103 |
gcaaaaccaccttcttcaaatatgctatttcaatctttgtgtcatcttcttgttgttgttgttgctccttaatattgttatctttgagttgatgaggttt |
202 |
Q |
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| T |
26122661 |
gcaaaaccatcttcttcaaatatgctatttcaatctttgtgtcatcttcttcttcttctt---------------------ctttgagttgatgaggttt |
26122739 |
T |
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| Q |
203 |
cttcatttcaaaatcaattaggtcatgagatttagtagatgattggtgagtcattgtagtggtatttgtgtttgtgtctgtg |
284 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||| |
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| T |
26122740 |
cttcatttcaagatcaattaggtcatgagatttagtagatgattggtgagtcattgtagtagtatttgtgtttgtgtttgtg |
26122821 |
T |
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Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 92
Target Start/End: Complemental strand, 42365921 - 42365835
Alignment:
| Q |
6 |
tcttgtccccacatatctggaatccatactcttccacccatttcaactctatgtctcttcaacctctctcttccactttcttcttcc |
92 |
Q |
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||||| ||||| || || |||||||| ||||||||| | | |||||||||||||||||||| |||||||||| |||| || |||||| |
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| T |
42365921 |
tcttgaccccatatttcaggaatccaaactcttccagctacttcaactctatgtctcttcagcctctctctttcactatcctcttcc |
42365835 |
T |
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