View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2365_low_14 (Length: 275)
Name: NF2365_low_14
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 18 - 263
Target Start/End: Complemental strand, 39280532 - 39280287
Alignment:
| Q |
18 |
acccttggctgacatgctattcacaacttcagaagcttcctcgaagtgactctgcttacagaaaccatctatcaatatagtgtatgtgatcacattggcc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
39280532 |
acccttggctgacatgctattcacaactttagaagcttcctcgaagtgaccctgcttacagaaaccatctatcaatatagtgtatgtgatcacattgggc |
39280433 |
T |
|
| Q |
118 |
tcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcccctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
39280432 |
tcaaaacctttcttgaccatctcatctaagaattcaagagcagagaccagatacccctttttgcaaagcccatcgatcattatgttaaacgtgaaggcat |
39280333 |
T |
|
| Q |
218 |
caggctcaaaaccggcaattaccatgtttttgtacaaaagatcctt |
263 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39280332 |
caggctcaaaaccggcaattaccatgtttttgtacaaaagatcctt |
39280287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 127; Significance: 1e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 73 - 263
Target Start/End: Original strand, 17349847 - 17350037
Alignment:
| Q |
73 |
ttacagaaaccatctatcaatatagtgtatgtgatcacattggcctcaaaacctttcttgaccatctcatctaagaattcaagagaagagaccagatgcc |
172 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||||||||||| |||||||| || || |
|
|
| T |
17349847 |
ttacagaaaccatttatcaatatagtgtatgtgatcacatttggctcaaaacctttctctaccatctcatttaagaattcaagagcagagaccaaatacc |
17349946 |
T |
|
| Q |
173 |
cctttttgcaaagcccgtcgatcattatgttaaacgtgaaggcatcaggctcaaaaccggcaattaccatgtttttgtacaaaagatcctt |
263 |
Q |
| |
|
|||| |||||||| || |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
17349947 |
ccttcttgcaaagtccatcgatcattatgttaaacatgaaggcatcaggctcaaagccggcaattaccatgttttggtacagaagatcctt |
17350037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University