View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2365_low_15 (Length: 267)
Name: NF2365_low_15
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_15 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
| [»] scaffold0205 (1 HSPs) |
| | |
|
| [»] scaffold0026 (2 HSPs) |
| | |
|
| [»] scaffold1752 (1 HSPs) |
| | |
|
| [»] scaffold0158 (1 HSPs) |
| | |
|
| [»] scaffold0743 (2 HSPs) |
| | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 31 - 267
Target Start/End: Complemental strand, 18032133 - 18031897
Alignment:
| Q |
31 |
acgacattgacttcgaaaaatacaacgaaaatagagacaaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaatt |
130 |
Q |
| |
|
|||||||||||||| |||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
18032133 |
acgacattgacttcaaaaaatactacaaaaatagagacaaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcactt |
18032034 |
T |
|
| Q |
131 |
ctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccg |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |
|
|
| T |
18032033 |
ctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagcgagttacacgtcaaaaaattccg |
18031934 |
T |
|
| Q |
231 |
acaacgtattgcgaaagcaaaacggtgtctcttattc |
267 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18031933 |
acaacgtattgcgaaagcaaaacggtgtctcttattc |
18031897 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 19804239 - 19804086
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| ||||||| || ||| |||| ||||| ||| |
|
|
| T |
19804239 |
tttttaatcgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaagaatttttaggcctgtaactatacgcta |
19804140 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
||||| || | ||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
19804139 |
tgaaagtagggggttacgtgtctaaaaattccgacaacgtgttgcgaaagcaaa |
19804086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 99; Significance: 6e-49; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 69 - 263
Target Start/End: Complemental strand, 32878912 - 32878720
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
|||||||||| ||||| ||||||||| |||||||||||||||||||||||| ||| || || | ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
32878912 |
aaacgacatccgacttaaaaaaattcagatttttaattgaaaaggttaaagcaaaaacacttattttcttttaattaagaatttattgaattaagaaaaa |
32878813 |
T |
|
| Q |
169 |
agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctctt |
263 |
Q |
| |
|
||||||| |||||| ||||||||||||||||||| || ||||||| |||| |||||||||||||||| |||||||||| |||||||||||||| |
|
|
| T |
32878812 |
agaatttttaagcctgtaattatacactacgaaa-tagggagttacgcgtctaaaaattccgacaacgtgttgcgaaagc-aaacggtgtctctt |
32878720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 108 - 251
Target Start/End: Original strand, 2612785 - 2612928
Alignment:
| Q |
108 |
aaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacactacgaaagcagt |
207 |
Q |
| |
|
|||| ||||||||||||||| |||| || ||||||||||||| |||||||||||||||||||||||| ||||| ||| |||| |||||| |||||| |
|
|
| T |
2612785 |
aaaaagttaaagcgaaatcatttcttttattttaattaagaatttattgaattaagaaaagagaatttttaagcttataactatatactacggaagcagg |
2612884 |
T |
|
| Q |
208 |
gagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| |||| ||||| | |||||||||||| ||||||||| |
|
|
| T |
2612885 |
gagttatgcgtctaaaaatcctgacaacgtattgtgaaagcaaa |
2612928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 69 - 202
Target Start/End: Original strand, 1068645 - 1068778
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
||||||||| | |||| |||||||| | |||||||||||| ||||||||||||||| || |||| ||| ||| ||||||||| ||||||||||||||||| |
|
|
| T |
1068645 |
aaacgacatataacttagaaaaatttagatttttaattgagaaggttaaagcgaaaacatttcttttcttttcattaagaatttattgaattaagaaaag |
1068744 |
T |
|
| Q |
169 |
agaatttgtaagcccgtaattatacactacgaaa |
202 |
Q |
| |
|
||||| ||| |||| |||||||||||||| |
|
|
| T |
1068745 |
gaaatttttaaatttgtaactatacactacgaaa |
1068778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 69 - 249
Target Start/End: Complemental strand, 21178423 - 21178243
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
|||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||| || |||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
21178423 |
aaacgatatccgacttagaaaaattcagatttttaattgaaaaggttaaagcgaaagcacttcttttcttttaattaagaatttattgaattaagaaaag |
21178324 |
T |
|
| Q |
169 |
agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagca |
249 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| || |||||||| | | ||| ||| |||||||||||||||||||| |
|
|
| T |
21178323 |
gaaatttttaagcctgtaattatacactacgaaagtagggagttacatgcctaaaatttctgacaacgtattgcgaaagca |
21178243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0205 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: scaffold0205
Description:
Target: scaffold0205; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 3144 - 3326
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
|||||| ||| ||||| |||||||||| ||||||||||||||||||||||| ||| || || | ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
3144 |
aaacgatatccgacttagaaaaattcagatttttaattgaaaaggttaaagtaaaaacacttattttcttttaattaagaatttattgaattaagaaaag |
3243 |
T |
|
| Q |
169 |
agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
||||| |||||| |||||||||||||||||||| || ||||||| | | ||| ||| |||||||||||||||||||||| |
|
|
| T |
3244 |
gaaatttttaagcctgtaattatacactacgaaagtagggagttacgtgcctaaaatttctgacaacgtattgcgaaagcaaa |
3326 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 83; Significance: 2e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 69 - 251
Target Start/End: Original strand, 28361016 - 28361197
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
|||||| ||| ||||| |||||||||| ||||||||||||||| |||||||| ||| || |||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
28361016 |
aaacgatatccgacttagaaaaattcagatttttaattgaaaatgttaaagccaaagcacttcttttcttttaattaagaatttattgaattaagaaaag |
28361115 |
T |
|
| Q |
169 |
agaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| |||||| |||||||||||||||||||| || ||||||| | | ||| ||| ||||||||||||| |||||||| |
|
|
| T |
28361116 |
-gaatttttaagcctgtaattatacactacgaaagtagggagttacgtgcctaaaatttctgacaacgtattgcaaaagcaaa |
28361197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 40578894 - 40579047
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
|||||||| |||||||||||||| ||| || || | ||| ||||||||||| | ||||||||| |||||| |||||| || ||| |||||||||| ||| |
|
|
| T |
40578894 |
tttttaatagaaaaggttaaagcaaaagcatttattttcttttaattaagagtttattgaatttagaaaaaggaatttttaggcctgtaattatacgcta |
40578993 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || ||||| |||| ||||||||||||| || ||||||||||||| |
|
|
| T |
40578994 |
cgaaagtaggttgttacgcgtctaaaaattccgacaatgtgttgcgaaagcaaa |
40579047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 27272683 - 27272835
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
|||||||| ||||| |||||||||||| || || | ||| ||||||||||| | ||||||||| |||||| |||||| | || || ||||||||| || |
|
|
| T |
27272683 |
tttttaatagaaaaagttaaagcgaaaacatttattttcttttaattaagagtttattgaatttagaaaaaggaattt-ttaggccttaattatacgata |
27272781 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || ||||| | || |||||| ||||||||| || |||||||||| |
|
|
| T |
27272782 |
cgaaagtaggttgttacgcatctaaaaatttcgacaacgtgttacgaaagcaaa |
27272835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 171
Target Start/End: Complemental strand, 16548029 - 16547954
Alignment:
| Q |
97 |
atttttaattgaaaaggttaaagcgaaatca-attctcttcctttaattaagaatctattgaattaagaaaagaga |
171 |
Q |
| |
|
|||||||||||||||||||||||| ||| || || | ||| ||||||||||||| |||||||| || |||||||| |
|
|
| T |
16548029 |
atttttaattgaaaaggttaaagcaaaaacatttttttttcttttaattaagaatttattgaatcaaaaaaagaga |
16547954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: scaffold0026
Description:
Target: scaffold0026; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 80 - 263
Target Start/End: Original strand, 71269 - 71450
Alignment:
| Q |
80 |
gacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaa |
179 |
Q |
| |
|
||||| |||||||||| |||||||| ||||||| ||||||||||| || |||| ||| ||||||||||| | |||||||||||||||||||||||| ||| |
|
|
| T |
71269 |
gacttagaaaaattcagatttttaaatgaaaagcttaaagcgaaagcacttcttttcttttaattaagatt-tattgaattaagaaaagagaatttttaa |
71367 |
T |
|
| Q |
180 |
gcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaaacggtgtctctt |
263 |
Q |
| |
|
|| |||| ||||||||||||||| || ||||||| | | | ||||| ||||||||||||||||||| |||||||||||||| |
|
|
| T |
71368 |
gcttgtaaatatacactacgaaagtagcgagttacgcacctaataattctgacaacgtattgcgaaagc-aaacggtgtctctt |
71450 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0026; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 87 - 203
Target Start/End: Original strand, 73317 - 73432
Alignment:
| Q |
87 |
aaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgta |
186 |
Q |
| |
|
||||||||| |||||| |||||||||||||| |||||| || |||| ||| ||||||||||||| | |||||||||||||||||||||| ||||| ||| |
|
|
| T |
73317 |
aaaaattcaaatttttgattgaaaaggttaa-gcgaaagcatttcttttcatttaattaagaatttgttgaattaagaaaagagaatttctaagcttgta |
73415 |
T |
|
| Q |
187 |
attatacactacgaaag |
203 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
73416 |
actatacactacgaaag |
73432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 69 - 214
Target Start/End: Original strand, 18274244 - 18274389
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
|||||| ||| ||||| |||||||||| |||||||||||||||||||||||||||| || |||| ||| ||||||||||||| ||||||||||||||| | |
|
|
| T |
18274244 |
aaacgatatccgacttagaaaaattcagatttttaattgaaaaggttaaagcgaaagcacttcttttcttttaattaagaatttattgaattaagaaagg |
18274343 |
T |
|
| Q |
169 |
agaatttgtaagcccgtaattatacactacgaaagcagtgagttac |
214 |
Q |
| |
|
||||| |||| | |||||||||||||||||||| || ||||||| |
|
|
| T |
18274344 |
gaaatttttaagactgtaattatacactacgaaagtagggagttac |
18274389 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 48086805 - 48086958
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
||||||||||||| |||||||| |||| || |||| ||| ||||||||||| | ||||||||| |||||| |||||| || ||| |||||||||| ||| |
|
|
| T |
48086805 |
tttttaattgaaagggttaaagtgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaggaatttttaggcctgtaattatacgcta |
48086904 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || | |||| ||| | | |||||||||||| ||||||||||||| |
|
|
| T |
48086905 |
cgaaagtaggggattacgtgtctaagagttccgacaacgtgttgcgaaagcaaa |
48086958 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 2e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 69 - 251
Target Start/End: Complemental strand, 25607446 - 25607263
Alignment:
| Q |
69 |
aaacgacatctgacttcgaaaaat-tcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaa |
167 |
Q |
| |
|
|||||| ||| ||||| ||||||| ||| |||||||| |||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| |
|
|
| T |
25607446 |
aaacgatatccgacttagaaaaatatcaagtttttaatagaaaaggttaaagcgaaagcatttcttttcttttaattaagattttattgaatttagaaaa |
25607347 |
T |
|
| Q |
168 |
gagaatttgtaagcccgtaattatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || ||| |||||||||| ||||||||| || ||||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
25607346 |
aggaatttttaggcctgtaattatacgctacgaaagtaggttgttacgcgtctaaaaattccgacaacgtgttgcgaaagcaaa |
25607263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 27774713 - 27774560
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| ||||||| || ||| |||| ||||| ||| |
|
|
| T |
27774713 |
tttttaatcgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaagaatttttaggcctgtaactatacgcta |
27774614 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
||||| || | ||||| ||| |||||||||||||||| ||||||||||||| |
|
|
| T |
27774613 |
tgaaagtagggggttacgtgtctaaaaattccgacaacgtgttgcgaaagcaaa |
27774560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1752 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold1752
Description:
Target: scaffold1752; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 1240 - 1087
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| ||||| || ||| |||||||||| ||| |
|
|
| T |
1240 |
tttttaattgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaagaaatttttaggcctgtaattatacgcta |
1141 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || | |||||| ||| | | |||||||||||| ||||||||||||| |
|
|
| T |
1140 |
cgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagcaaa |
1087 |
T |
|
Back To:
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Target: scaffold0158 (Bit Score: 62; Significance: 7e-27; HSPs: 1)
Name: scaffold0158
Description:
Target: scaffold0158; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 11415 - 11568
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| | || || || ||| |||||||||| ||| |
|
|
| T |
11415 |
tttttaattgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaaaaaattttaggcctgtaattatacccta |
11514 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || | |||||| ||| | | |||||||||||| ||||||||||||| |
|
|
| T |
11515 |
cgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagcaaa |
11568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 98 - 251
Target Start/End: Complemental strand, 1731423 - 1731270
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
||||||||||||||||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| |||| || ||| |||||||||| ||| |
|
|
| T |
1731423 |
tttttaattgaaaaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaagaaattattaggcctgtaattatacgcta |
1731324 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||| || | |||||| ||| | | |||||||||||| ||||||||||||| |
|
|
| T |
1731323 |
cgaaagtagggggttacatgtctaagagttccgacaacgtgttgcgaaagcaaa |
1731270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 98 - 203
Target Start/End: Original strand, 11984757 - 11984862
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
|||||||| |||||||||||||||||| || |||| ||| |||||||| || | | ||| | | |||||| |||||| || ||| |||||||||| ||| |
|
|
| T |
11984757 |
tttttaatagaaaaggttaaagcgaaagcatttcttttcttttaattatgagtttgttgtacttagaaaaatgaatttttaggcctgtaattatacgcta |
11984856 |
T |
|
| Q |
198 |
cgaaag |
203 |
Q |
| |
|
|||||| |
|
|
| T |
11984857 |
cgaaag |
11984862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 12126488 - 12126553
Alignment:
| Q |
103 |
aattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaag |
168 |
Q |
| |
|
|||||||||||||||||||||| | | || ||| |||||||||||| ||||||||||||||||| |
|
|
| T |
12126488 |
aattgaaaaggttaaagcgaaaacgctccttttcttttaattaagaacttattgaattaagaaaag |
12126553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: scaffold0743
Description:
Target: scaffold0743; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 118 - 4
Alignment:
| Q |
88 |
aaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaa |
187 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || ||| || |||||||||||| | ||||||||||||||| |||||| ||||| || | |
|
|
| T |
118 |
aaaattcaaatttttaattgaaaaggttaaagcgaaagcatttcatttattttaattaagaaattcttgaattaagaaaagggaatttttaagcttgtga |
19 |
T |
|
| Q |
188 |
ttatacactacgaaa |
202 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
18 |
ttatacactacgaaa |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0743; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 202
Target Start/End: Complemental strand, 432 - 318
Alignment:
| Q |
88 |
aaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaa |
187 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||| || ||| || |||||||||||| | ||||||||| |||||||||||| ||||| || | |
|
|
| T |
432 |
aaaattcaaatttttaattgaaaaggttaaagcgaaagcatttcatttattttaattaagaaattcttgaattaaaaaaagagaatttttaagcttgtga |
333 |
T |
|
| Q |
188 |
ttatacactacgaaa |
202 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
332 |
ttatacactacgaaa |
318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 98 - 251
Target Start/End: Original strand, 25753248 - 25753401
Alignment:
| Q |
98 |
tttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacacta |
197 |
Q |
| |
|
|||||||| ||| |||||||||||||| || |||| ||| ||||||||||| | ||||||||| |||||| |||||| || ||| |||||||||| ||| |
|
|
| T |
25753248 |
tttttaatcgaagaggttaaagcgaaagcatttcttttcttttaattaagagtttattgaatttagaaaaaggaatttttaggcctgtaattatacgcta |
25753347 |
T |
|
| Q |
198 |
cgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||| | || | ||||| ||| | | |||||||||||| ||||||||||||| |
|
|
| T |
25753348 |
cgaatgtagggggttacgtgtctaagagttccgacaacgtgttgcgaaagcaaa |
25753401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 199
Target Start/End: Complemental strand, 12329510 - 12329408
Alignment:
| Q |
97 |
atttttaattgaaaaggttaaagcgaaatcaattctcttcctttaattaagaatctattgaattaagaaaagagaatttgtaagcccgtaattatacact |
196 |
Q |
| |
|
|||||||||||| ||||||||||||||| || |||| | | ||| || |||||| |||||||| ||||||||||||||| ||||| || ||||||||| |
|
|
| T |
12329510 |
atttttaattgagaaggttaaagcgaaaacatttctttccttttgataaagaatgtattgaatcaagaaaagagaatttttaagcttatagttatacact |
12329411 |
T |
|
| Q |
197 |
acg |
199 |
Q |
| |
|
||| |
|
|
| T |
12329410 |
acg |
12329408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 225200 - 225037
Alignment:
| Q |
88 |
aaaattcatatttttaattgaaaaggttaaagcgaaatcaattctcttccttt-aattaagaatctattgaattaagaaaagagaatttgtaagcccgta |
186 |
Q |
| |
|
|||| ||| ||||||||||||||||||||| |||||| || |||| || ||| || ||||||| |||| |||||||||||| || ||| ||||| ||| |
|
|
| T |
225200 |
aaaactcagatttttaattgaaaaggttaatgcgaaagcacttcttttaattttaactaagaatttattaaattaagaaaagggattttttaagcatgta |
225101 |
T |
|
| Q |
187 |
attatacactacgaaagcagtgagttacacgtcagaaaattccgacaacgtattgcgaaagcaaa |
251 |
Q |
| |
|
|||||||| |||||||| || ||||||| | | ||||||||||| | |||||| ||||||||| |
|
|
| T |
225100 |
attatacaatacgaaagtagggagttacgcttttaaaaattccgac-atgtattgtgaaagcaaa |
225037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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