View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_low_17 (Length: 251)
Name: NF2365_low_17
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 181; Significance: 7e-98; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 181; E-Value: 7e-98
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 31887491 - 31887725
Alignment:
| Q |
1 |
ttgttgtttctgtgcttccaaatactaaggtgactgcaaaaatttgtttttgagcaatatccagttgttgaaataattgaaaaatcatgtcagcacatgt |
100 |
Q |
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| T |
31887491 |
ttgttgtttctgtgcttccaaatactaaggtgactgcaaaaatttgtttttgagcaatatccagttgttgaaataatttgaaaatcatgtcagcacatgt |
31887590 |
T |
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| Q |
101 |
atccataaggtttctctttctctcnnnnnnnnnnnncaaattttgtgcaaagggtgctcgtgaaaatataacttttatctctccatcatggcatcaaatc |
200 |
Q |
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| T |
31887591 |
atccataaggtttctctttctct--aaaaaaaaaaacaaattttgtgcagagggtgctcgtgaaaatataacttttatctctccatcatggcatcaaatc |
31887688 |
T |
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| Q |
201 |
aaataaaccatataatcttgttatttccactcccacc |
237 |
Q |
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| T |
31887689 |
aaataaaccatataatcttgttatttccactcccacc |
31887725 |
T |
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Back To:
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Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 25737070 - 25736967
Alignment:
| Q |
1 |
ttgttgtttctgtgcttccaaatac----taaggtgactgcaaaaatttg-tttttgagcaatatccagttgttgaaataattgaaaaatcatgtcagca |
95 |
Q |
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|||||||||||||||||||| || | ||||||||| ||||||||||| ||||| ||||||||| |||||||||||||| || ||||||||||||||| |
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| T |
25737070 |
ttgttgtttctgtgcttccatatgctccataaggtgaccgcaaaaatttgtttttttagcaatatctagttgttgaaataactggaaaatcatgtcagca |
25736971 |
T |
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| Q |
96 |
catg |
99 |
Q |
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|||| |
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| T |
25736970 |
catg |
25736967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 4 - 86
Target Start/End: Complemental strand, 44785321 - 44785236
Alignment:
| Q |
4 |
ttgtttctgtgcttccaaatac---taaggtgactgcaaaaatttgtttttgagcaatatccagttgttgaaataattgaaaaatc |
86 |
Q |
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|||||||| |||||||| |||| |||| |||| |||||||||||||||||||||||| | |||||||||||||| || |||||| |
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| T |
44785321 |
ttgtttctctgcttccatatacgcataagatgaccgcaaaaatttgtttttgagcaatacctagttgttgaaataactggaaaatc |
44785236 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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