View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_low_20 (Length: 235)
Name: NF2365_low_20
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_20 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 235
Target Start/End: Complemental strand, 6995633 - 6995412
Alignment:
| Q |
14 |
agtattaggctattatacctaatactgatgtctacaacatcaacataagtagtgtttgtcttgatatccaacttttaccggcatcctttttggtgtaaat |
113 |
Q |
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| T |
6995633 |
agtattatgctattagacctaatactgatgtctacaacatcaacataagtagtgtttgtcttgatatccaacttttgctggcatcctttttggtgtaaat |
6995534 |
T |
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| Q |
114 |
tgggtattctctccgcgtgtaactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaactctccctaaacttttaccggcatctaaa |
213 |
Q |
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| T |
6995533 |
tgggtattctctccgcgtgtaactgcggagactaatccctcagatcttgtgaaatttaaataggcggtaaactctccctaaacttttaccggcatctaaa |
6995434 |
T |
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| Q |
214 |
aaggttgatcaatagattttcc |
235 |
Q |
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| T |
6995433 |
aaggttgatcaatagattttcc |
6995412 |
T |
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Target: chr1 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 42 - 98
Target Start/End: Complemental strand, 40895306 - 40895250
Alignment:
| Q |
42 |
tgtctacaacatcaacataagtagtgtttgtcttgatatccaacttttaccggcatc |
98 |
Q |
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| T |
40895306 |
tgtctacaacatcaacataagtagtgtttgtcttgatatccaatttttactggcatc |
40895250 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 134 - 183
Target Start/End: Original strand, 7653619 - 7653668
Alignment:
| Q |
134 |
aactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaa |
183 |
Q |
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| T |
7653619 |
aactgcggagactaatctctcaagtattttgaaacttaaatggaccgtaa |
7653668 |
T |
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Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 195
Target Start/End: Original strand, 23933623 - 23933716
Alignment:
| Q |
100 |
tttttggtgtaaattgggtattctctccgcgtgtaactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaactctccctaaa |
195 |
Q |
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| T |
23933623 |
tttttggtgtaaattgggtatcctct--gtgtgcaattgcagagactaatccctcaagtattgtcgaacctaaatgggcggcaaactctccctaaa |
23933716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 186
Target Start/End: Original strand, 34532929 - 34532981
Alignment:
| Q |
134 |
aactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaact |
186 |
Q |
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| T |
34532929 |
aactgcgtagactaatccctcaagtcttatgaaaccaaaatgagcggtaaact |
34532981 |
T |
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Target: chr3 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 124 - 157
Target Start/End: Complemental strand, 38331275 - 38331242
Alignment:
| Q |
124 |
ctccgcgtgtaactgcggagactaatccctcaaa |
157 |
Q |
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| T |
38331275 |
ctccgcgtgcaactgcggagactaatccctcaaa |
38331242 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 195
Target Start/End: Complemental strand, 1642775 - 1642682
Alignment:
| Q |
100 |
tttttggtgtaaattgggtattctctccgcgtgtaactgcggagactaatccctcaaatcttatgaaacttaaatggacggtaaactctccctaaa |
195 |
Q |
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| T |
1642775 |
tttttggtgtaaatcggatatcctc--cgcgcgcaactgcggaaactaatccctcaagtattgtgggacccaaatggacggtagactctccctaaa |
1642682 |
T |
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