View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_low_23 (Length: 227)
Name: NF2365_low_23
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 4e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 16 - 210
Target Start/End: Complemental strand, 53157997 - 53157803
Alignment:
| Q |
16 |
aaaggatgaagaatacctaagtctttgggtaggagtcgtccttgacagtgatgatatttgggtggagagagatatacatatggatacagaatgtaagaaa |
115 |
Q |
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| T |
53157997 |
aaaggatgaagaatacctaagtctttgggtaggagtcgtccttgacaatgatgatatttgggtggagagagatatacatatggatacaaaatgtaagaaa |
53157898 |
T |
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| Q |
116 |
ttagtaagccgacacggtggcagcaagagggcaaccagactcgcgatggctttgttgaaggccagcccccctattctcactctcatggtctttct |
210 |
Q |
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| T |
53157897 |
ttagtaaggcgacacggtggcagcaagagggcaaccagactcgcgatggctttgttgaaggccagcccccctattctcactctcatggtctttct |
53157803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 155; Significance: 2e-82; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 16 - 210
Target Start/End: Original strand, 7370316 - 7370509
Alignment:
| Q |
16 |
aaaggatgaagaatacctaagtctttgggtaggagtcgtccttgacagtgatgatatttgggtggagagagatatacatatggatacagaatgtaagaaa |
115 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||| ||||||||||||||||| ||||||||||| |
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| T |
7370316 |
aaaggatgaagaatacctaagtctttgggtaggagtcgtccttgacagagatgatatttgggcggagagatatatacatatggatacaaaatgtaagaaa |
7370415 |
T |
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| Q |
116 |
ttagtaagccgacacggtggcagcaagagggcaaccagactcgcgatggctttgttgaaggccagcccccctattctcactctcatggtctttct |
210 |
Q |
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| T |
7370416 |
tccgtaagcc-acacggtggcagcaagagggcaaccagactcgcgatgactttgttgaaggccaacccccctattctcactctcatggtctttct |
7370509 |
T |
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