View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2365_low_24 (Length: 216)

Name: NF2365_low_24
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2365_low_24
NF2365_low_24
[»] chr2 (1 HSPs)
chr2 (1-200)||(18031680-18031879)
[»] scaffold0026 (1 HSPs)
scaffold0026 (67-200)||(73587-73713)
[»] chr6 (3 HSPs)
chr6 (67-200)||(2613037-2613164)
chr6 (1-39)||(1068860-1068898)
chr6 (1-50)||(32878649-32878698)
[»] chr1 (1 HSPs)
chr1 (1-52)||(51058485-51058536)
[»] chr3 (1 HSPs)
chr3 (167-200)||(12126859-12126892)
[»] chr5 (2 HSPs)
chr5 (78-164)||(16547706-16547790)
chr5 (146-198)||(28361384-28361431)
[»] scaffold0009 (1 HSPs)
scaffold0009 (5-50)||(224955-225000)
[»] chr4 (1 HSPs)
chr4 (1-50)||(18274413-18274462)
[»] chr7 (1 HSPs)
chr7 (70-110)||(12329197-12329237)


Alignment Details
Target: chr2 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 18031879 - 18031680
Alignment:
Q  1 ttttatttttcttgttactatttaataagcgcaaaattactcgagtgacggaaacccgtcgtttatgtctctacccgtcatatatttaattaaaaccaat 100  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031879 ttttatttttctcgttactatttaataagcgcaaaattactcgagtgacggaaacccgtcgtttatgtctctacccgtcatatatttaattaaaaccaat 18031780  T
Q  101 atttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaagaacaagaagcggtacttgttaaattggtctctgtg 200  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18031779 atttattttacgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaagaacaagaagcggtacttgttaaattggtctctgtg 18031680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 73587 - 73713
Alignment:
Q  67 gtctctacccgtcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaaga 166  Q
    |||||| |||||||||||||||||||||| |||||||||||||| ||  | || |||  |||||||||||| || ||  ||||||||||||||      |    
T  73587 gtctcttcccgtcatatatttaattaaaatcaatatttattttacgc-atgaaaccaaatgttttgaattttgctttagataaacatagaaac------a 73679  T
Q  167 acaagaagcggtacttgttaaattggtctctgtg 200  Q
    |||||||||| |||||||||||||||||||||||    
T  73680 acaagaagcgatacttgttaaattggtctctgtg 73713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 2613037 - 2613164
Alignment:
Q  67 gtctctacccgtcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaaga 166  Q
    ||||||||||||| ||||||||||||||| |||||||||||||| || | ||| | |  | ||||||||||  | ||  |||||||||| |||      |    
T  2613037 gtctctacccgtcttatatttaattaaaatcaatatttattttacgcacgaaatcaaaatattttgaatttttccttagataaacataggaac------a 2613130  T
Q  167 acaagaagcggtacttgttaaattggtctctgtg 200  Q
    ||||||||||||||||||||||||||||| ||||    
T  2613131 acaagaagcggtacttgttaaattggtctatgtg 2613164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 1068860 - 1068898
Alignment:
Q  1 ttttatttttcttgttactatttaataagcgcaaaatta 39  Q
    |||||||||||| ||||||||||||| ||||||||||||    
T  1068860 ttttatttttctcgttactatttaattagcgcaaaatta 1068898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 32878698 - 32878649
Alignment:
Q  1 ttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 50  Q
    |||||||||||| ||||||||||||| ||| ||||  |||||||||||||    
T  32878698 ttttatttttctcgttactatttaattagcacaaagctactcgagtgacg 32878649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 52
Target Start/End: Complemental strand, 51058536 - 51058485
Alignment:
Q  1 ttttatttttcttgttactatttaataagcgcaaaattactcgagtgacgga 52  Q
    |||||||| ||||||||||||||||| ||| |||||||||||||||| ||||    
T  51058536 ttttatttctcttgttactatttaattagcacaaaattactcgagtggcgga 51058485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 200
Target Start/End: Original strand, 12126859 - 12126892
Alignment:
Q  167 acaagaagcggtacttgttaaattggtctctgtg 200  Q
    ||||||||||||||||||||||||||||||||||    
T  12126859 acaagaagcggtacttgttaaattggtctctgtg 12126892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 78 - 164
Target Start/End: Complemental strand, 16547790 - 16547706
Alignment:
Q  78 tcatatatttaattaaaaccaatatttattttatgcgctaaacccagttgttttgaatttcgcatttcataaacatagaaacaacaa 164  Q
    |||||||||||||||||| |||||||  |||||||||| |||||||  | |||||||||| ||  |  || ||||||||||||||||    
T  16547790 tcatatatttaattaaaatcaatatt--ttttatgcgcgaaacccaactattttgaattttgccctagatgaacatagaaacaacaa 16547706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 28361384 - 28361431
Alignment:
Q  146 ataaacatagaaacaacaagaacaagaagcggtacttgttaaattggtctctg 198  Q
    |||||||||||||| |||||||     ||||||||||||||||||||||||||    
T  28361384 ataaacatagaaacgacaagaa-----agcggtacttgttaaattggtctctg 28361431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 50
Target Start/End: Complemental strand, 225000 - 224955
Alignment:
Q  5 atttttcttgttactatttaataagcgcaaaattactcgagtgacg 50  Q
    |||||||| ||| ||||||||| |||||||| ||||||||||||||    
T  225000 atttttctcgttgctatttaattagcgcaaagttactcgagtgacg 224955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 1 - 50
Target Start/End: Original strand, 18274413 - 18274462
Alignment:
Q  1 ttttatttttcttgttactatttaataagcgcaaaattactcgagtgacg 50  Q
    |||||| ||||||||||||||||||| |||||||| ||||  ||||||||    
T  18274413 ttttatctttcttgttactatttaattagcgcaaagttacatgagtgacg 18274462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 110
Target Start/End: Complemental strand, 12329237 - 12329197
Alignment:
Q  70 tctacccgtcatatatttaattaaaaccaatatttatttta 110  Q
    ||||||||||||||||||| |||||| |||||| |||||||    
T  12329237 tctacccgtcatatatttatttaaaatcaatatatatttta 12329197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University