View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_low_25 (Length: 214)
Name: NF2365_low_25
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_25 |
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Alignment Details
Target: chr1 (Bit Score: 128; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 128; E-Value: 2e-66
Query Start/End: Original strand, 17 - 190
Target Start/End: Original strand, 5452146 - 5452315
Alignment:
| Q |
17 |
caaaggtaaaaacgagttaacgttccatgaccacatgagagagacaccactcttcctccaaaattttaaggcatgaagtatgtgaattaaaatctcctat |
116 |
Q |
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| T |
5452146 |
caaaggtaaaaacgagttaacgctccatgaccgcatgagagagacaccactcttcctccaaaatcgtaaggcatgaagtatgtgaatt-aaatctcctat |
5452244 |
T |
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| Q |
117 |
atattcgacattttgtcaattgatagttaatttgggactagccactcaaactctccactcaaatgtgaatatcc |
190 |
Q |
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|||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
5452245 |
atattcaacattttgtcaattgatagttaatttgggacttg---ctcaaactctccactcaaatgtgaatatcc |
5452315 |
T |
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