View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2365_low_4 (Length: 451)
Name: NF2365_low_4
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 19 - 441
Target Start/End: Original strand, 44433553 - 44433975
Alignment:
| Q |
19 |
gaatcctgcatgaaaaagggttgtaacttgttgtcacaatgatgacagacaattggttacagtgannnnnnnnnctccctgggaatgagttgtttaatat |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |
|
|
| T |
44433553 |
gaatcctgcatgaaaaagggttgtaacttgttgtcacaatgatgacagacaattggttacaatgatttttttttctccctggggatgagttgtttaatat |
44433652 |
T |
|
| Q |
119 |
tttagacgatcaagattttagcgtgtttatcttttcttcacagtttagatcctggaatggagattatttgcaggttagggctctgttgttttcccgtcgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44433653 |
tttagacgatcaagattttagcgtgtttatcttttcttcacagtttagatcctggaatggagattatttgcaggttagggccctgttgttttcccgtcgc |
44433752 |
T |
|
| Q |
219 |
actctgacatcctctgctgcatttcaatttgtgtgtttcgatggaagtgttattgaagctaaatatggaaatttagctcaaacgaataacttggggcctt |
318 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44433753 |
attctgacatcctctgctgcatttcaatttgtgtgtttccatggaagtgttattgaagctaaatatggaaatttagctcaaacgaataacttggggcctt |
44433852 |
T |
|
| Q |
319 |
cgagttgggagacaactttgtcgccttgaactaataactatgtacaagtttacagctcacactatttacctacatgaatttcaaaagcaaccaattcttc |
418 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44433853 |
cgaattgggagacaactttgtcgccttgaactaataactatgtacaagtttacagctcaaactatttacctacatgaatttcaaaagcaaccaattcttc |
44433952 |
T |
|
| Q |
419 |
tgttttcttcctttcaccctttg |
441 |
Q |
| |
|
||||||||||||||||||||||| |
|
|
| T |
44433953 |
tgttttcttcctttcaccctttg |
44433975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University