View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2365_low_8 (Length: 380)
Name: NF2365_low_8
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 142; Significance: 2e-74; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 19 - 209
Target Start/End: Complemental strand, 45178275 - 45178074
Alignment:
| Q |
19 |
aaatttttccagttgttttgtttgtggtagaa-gctaacttataattccttgtcacaaactgtcattttgcattagtgccgtagttctgcattgggaggt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||| |
|
|
| T |
45178275 |
aaatttttccagttgttttgtttgtggtagaaagctaacttataattccttgtcacaaactgtcattttgtattagtgccgtagttctgcattaggaggt |
45178176 |
T |
|
| Q |
118 |
atttttgagcgtaccgaaacgcattgatattatta---------ttatgaaacaaagatgaacagtcacggca-tttccttttccccctttgtttgtgtt |
207 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
45178175 |
atttttgagcgtaccgaaacgcattgatattattattattattattatgaaacaaggatgaacagtcacggcattttccttttccccctttgtttgtgtt |
45178076 |
T |
|
| Q |
208 |
ga |
209 |
Q |
| |
|
|| |
|
|
| T |
45178075 |
ga |
45178074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 310 - 373
Target Start/End: Complemental strand, 45177906 - 45177843
Alignment:
| Q |
310 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcatctca |
373 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
45177906 |
agcactattggtgatggatctttcaacaatttctggataaataatattggacatattcttctca |
45177843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 276 - 313
Target Start/End: Complemental strand, 45178046 - 45178009
Alignment:
| Q |
276 |
aacttgctaaaatgcacattttggtattggcaaaagca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45178046 |
aacttgctaaaatgcacattttggtattggcaaaagca |
45178009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 218 - 249
Target Start/End: Complemental strand, 5904916 - 5904885
Alignment:
| Q |
218 |
aaagtgtgatttatttttataggaccaaaaat |
249 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
5904916 |
aaagtgtgatttatttttataggaccaaaaat |
5904885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 258
Target Start/End: Complemental strand, 19928034 - 19927993
Alignment:
| Q |
218 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaat |
258 |
Q |
| |
|
||||||||||||||||||||| |||||||||| ||||||||| |
|
|
| T |
19928034 |
aaagtgtgatttatttttatagggaccaaaaacttaattaat |
19927993 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 262
Target Start/End: Complemental strand, 10895594 - 10895549
Alignment:
| Q |
218 |
aaagtgtgatttatttttata-ggaccaaaaatttaattaatcctt |
262 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
10895594 |
aaagtgtgatttatttttatagggaccaaaaacttaattaaccctt |
10895549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University