View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2365_low_9 (Length: 378)
Name: NF2365_low_9
Description: NF2365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2365_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 362
Target Start/End: Complemental strand, 14261104 - 14260759
Alignment:
| Q |
16 |
gatgaagaaagtatatgtttgttgtccatgtagtatgagcgaatctaggttttaatccctagnnnnnnntcttttgttttacttataatataacattctt |
115 |
Q |
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| T |
14261104 |
gatgaagaaagtatatgtttgttgtccatgtagtatgagcgaatctaggttttaatccctagaaaaaaatcttttgttttacttataatataacattctt |
14261005 |
T |
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| Q |
116 |
atcgttttagtaccctcatgttaacatgtctaatacaaaagctaccatgacttgcatgtgctcactggacaactgtcacgtgtgcttttaacattgactt |
215 |
Q |
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| T |
14261004 |
atcgttttagtaccctcatgttaacatgtctaatacaaaagctaccatgaattgcatgtgctcactggacaactgtcacgtgtgcttttaacattgactt |
14260905 |
T |
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| Q |
216 |
ggtatttgtccagttagcagatgtatgtcatattgcagggactaatacccgtattcactcatattatagggatnnnnnnncatatataactcgaaaataa |
315 |
Q |
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| T |
14260904 |
ggtatttgtccaattagcagatgtatgtcatattgcagggactaatacccgtattcactcatattatagggat-aaaaaacatatataactcgaaaataa |
14260806 |
T |
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| Q |
316 |
actaccatgaaaatcattgaaaatattttgtttatcaatgttagaat |
362 |
Q |
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| T |
14260805 |
actaccatgaaaatcattgaaaatattttgtttatcaatgttagaat |
14260759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 152 - 329
Target Start/End: Complemental strand, 12275392 - 12275217
Alignment:
| Q |
152 |
aaaagctaccatgacttgcatgtgctcactggacaactgtcacgtgtgcttttaacattgacttggtatttgtccagttagcagatgtatgtcatattgc |
251 |
Q |
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| T |
12275392 |
aaaagctaccatggcatgcatacattcattggacaactgccatgtgtgcttttaacattgacttggtatttgtccggttagcatatgaatgtcatattgc |
12275293 |
T |
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| Q |
252 |
agggactaatacccgtattcactcatattatagggatnnnnnnncatatataactcgaaaataaactaccatgaaaat |
329 |
Q |
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| T |
12275292 |
agggactaattcccatattcgatcatattaca-ggat-taaaaacatatataacttgaaaataaactaacatgaaaat |
12275217 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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