View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2366_high_11 (Length: 201)

Name: NF2366_high_11
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2366_high_11
NF2366_high_11
[»] chr6 (9 HSPs)
chr6 (1-125)||(24882755-24882879)
chr6 (119-201)||(33019632-33019714)
chr6 (117-201)||(5086428-5086512)
chr6 (138-201)||(503957-504020)
chr6 (138-201)||(8263897-8263960)
chr6 (138-201)||(19227165-19227228)
chr6 (138-201)||(33639569-33639632)
chr6 (14-92)||(30058711-30058789)
chr6 (148-196)||(17874237-17874285)
[»] chr4 (13 HSPs)
chr4 (119-201)||(19114087-19114169)
chr4 (119-201)||(30310097-30310179)
chr4 (138-201)||(7473058-7473121)
chr4 (138-201)||(8934753-8934816)
chr4 (138-201)||(19644642-19644705)
chr4 (138-201)||(33988194-33988257)
chr4 (138-201)||(48031568-48031631)
chr4 (167-201)||(23119087-23119121)
chr4 (138-198)||(29554166-29554226)
chr4 (159-198)||(3861229-3861268)
chr4 (159-198)||(3869986-3870025)
chr4 (147-196)||(10563744-10563793)
chr4 (147-196)||(53779701-53779750)
[»] chr1 (7 HSPs)
chr1 (123-201)||(7178537-7178615)
chr1 (138-201)||(25505419-25505482)
chr1 (138-201)||(24314671-24314734)
chr1 (138-201)||(43810461-43810524)
chr1 (119-201)||(34709322-34709404)
chr1 (139-183)||(28098391-28098435)
chr1 (8-64)||(34594823-34594879)
[»] chr7 (10 HSPs)
chr7 (119-201)||(21439316-21439398)
chr7 (117-201)||(6970656-6970740)
chr7 (138-201)||(25923722-25923785)
chr7 (138-201)||(34519030-34519093)
chr7 (138-201)||(45987701-45987764)
chr7 (147-201)||(17804597-17804651)
chr7 (138-198)||(27941920-27941980)
chr7 (124-194)||(39060154-39060224)
chr7 (150-195)||(7377387-7377432)
chr7 (147-196)||(7459106-7459155)
[»] chr2 (4 HSPs)
chr2 (119-201)||(15017327-15017409)
chr2 (138-201)||(10978430-10978493)
chr2 (119-201)||(5325410-5325492)
chr2 (148-196)||(22725870-22725918)
[»] scaffold0108 (1 HSPs)
scaffold0108 (138-201)||(10560-10623)
[»] chr8 (3 HSPs)
chr8 (138-201)||(4988491-4988554)
chr8 (138-201)||(36318916-36318979)
chr8 (138-183)||(11155187-11155232)
[»] chr3 (4 HSPs)
chr3 (119-201)||(51144716-51144798)
chr3 (117-201)||(20894159-20894243)
chr3 (137-198)||(54558854-54558915)
chr3 (134-196)||(50543877-50543939)
[»] chr5 (4 HSPs)
chr5 (119-201)||(11575100-11575182)
chr5 (119-201)||(22095657-22095739)
chr5 (138-189)||(5415571-5415622)
chr5 (147-196)||(40089995-40090044)


Alignment Details
Target: chr6 (Bit Score: 117; Significance: 8e-60; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 1 - 125
Target Start/End: Complemental strand, 24882879 - 24882755
Alignment:
Q  1 tccctagctttagacctttgctatgtacataatcagctagagccttcattcctgaagggaatgtcgatgatttggcaaccatataaccctgccaccattt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24882879 tccctagctttagacctttgctatgtacataatcagctagagccttcattcctgaagggaatgttgatgatttggcaaccatataaccctgccaccattt 24882780  T
Q  101 tcaattataattaataaagtgtttt 125  Q
    |||||||||||||||||| ||||||    
T  24882779 tcaattataattaataaaatgtttt 24882755  T

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Target: chr6; HSP #2
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 33019714 - 33019632
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33019714 gtgttttaataattatgttactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 33019632  T

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Target: chr6; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 5086428 - 5086512
Alignment:
Q  117 aagtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||||||||||||||| |||||||||||||||||||| || ||||||||||||| ||| ||||||||||||||||||||||    
T  5086428 aagtgttttaataattatgttactcctttgcccaggttgctcgacaaagtaaaatattcgtccttaggttggttgaaagctagaa 5086512  T

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Target: chr6; HSP #4
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 503957 - 504020
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  503957 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 504020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 8263960 - 8263897
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8263960 actcctttatccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 8263897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 19227228 - 19227165
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| | |||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  19227228 actcctttactcaggttgcttgacaaagttaaatatttgtctctaggttggttgaaagctagaa 19227165  T

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Target: chr6; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 33639632 - 33639569
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| ||||| |||||||||||  |||||||||||||||||||||    
T  33639632 actcctttacccaggttgcttgacaaagttaaatatttgtccctaggttggttgaaagctagaa 33639569  T

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Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 14 - 92
Target Start/End: Complemental strand, 30058789 - 30058711
Alignment:
Q  14 acctttgctatgtacataatcagctagagccttcattcctgaagggaatgtcgatgatttggcaaccatataaccctgc 92  Q
    |||||||||||||||||| ||| |||||||||| | | ||||||||||||| ||   ||||||||||| || |||||||    
T  30058789 acctttgctatgtacatattcatctagagccttaaattctgaagggaatgttgaatctttggcaaccaaattaccctgc 30058711  T

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Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 17874237 - 17874285
Alignment:
Q  148 ccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    |||||||| | |||||||| ||||||||||||||||  |||||||||||    
T  17874237 ccaggttgttagataaagttaaatatttgtctttagcctggttgaaagc 17874285  T

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Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 19114169 - 19114087
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  19114169 gtgttttaataatcatgtgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaagctagaa 19114087  T

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Target: chr4; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 30310179 - 30310097
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||| || | ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||    
T  30310179 gtgttttaataatcatatgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaagctagaa 30310097  T

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Target: chr4; HSP #3
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 7473121 - 7473058
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7473121 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 7473058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 8934816 - 8934753
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  8934816 actcctttacccaggttgcttgataaagtaaactatttgtctttaggttggttgaaagctagaa 8934753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 19644705 - 19644642
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  19644705 actcctttacccaggttgcttgacaaagtaaaatatttgtctttaggttggttgaaagctagaa 19644642  T

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Target: chr4; HSP #6
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 33988194 - 33988257
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||    
T  33988194 actcctttacccaggttgcttgacaaagtaaaatatttatctttaggttggttgaaagctagaa 33988257  T

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Target: chr4; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 48031568 - 48031631
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||||||| || || ||||||||||||||||||||||||||||| ||||||||||    
T  48031568 actcctttgcccaggttactcgacaaagtaaaatatttgtctttaggttggttaaaagctagaa 48031631  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 167 - 201
Target Start/End: Complemental strand, 23119121 - 23119087
Alignment:
Q  167 aaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||||||||||||||||||||||||||||||    
T  23119121 aaaatatttgtctttaggttggttgaaagctagaa 23119087  T

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Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 29554166 - 29554226
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagcta 198  Q
    |||||| |||| |||||| | || ||||||||||| |||||||||| ||||||||||||||    
T  29554166 actcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaagcta 29554226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 3861268 - 3861229
Alignment:
Q  159 gataaagtaaaatatttgtctttaggttggttgaaagcta 198  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  3861268 gataaagtaaaatatttgtctttaggctggatgaaagcta 3861229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 159 - 198
Target Start/End: Complemental strand, 3870025 - 3869986
Alignment:
Q  159 gataaagtaaaatatttgtctttaggttggttgaaagcta 198  Q
    |||||||||||||||||||||||||| ||| |||||||||    
T  3870025 gataaagtaaaatatttgtctttaggctggatgaaagcta 3869986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 10563744 - 10563793
Alignment:
Q  147 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    ||||||||| | |||||||| ||||||||||||||||  |||||||||||    
T  10563744 cccaggttgttagataaagttaaatatttgtctttagcctggttgaaagc 10563793  T

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Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 53779750 - 53779701
Alignment:
Q  147 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    ||||||||| | |||||||| ||||||||||||||||  |||||||||||    
T  53779750 cccaggttgttagataaagttaaatatttgtctttagcctggttgaaagc 53779701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 7178615 - 7178537
Alignment:
Q  123 tttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||    
T  7178615 tttaataattatgttactcctttgcccaggttgcttgacaaagtaaaatatctgtctttaggttggttgaaagctagaa 7178537  T

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Target: chr1; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 25505419 - 25505482
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  25505419 actcctttacccaggttgcttgataaagtaaaatatttgtctttaagttggttgaaagctagaa 25505482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 24314734 - 24314671
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  24314734 actcctttacccaggttgcttgataaagttaaatatttgtctttaggttggttgaaggctagaa 24314671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 43810524 - 43810461
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||| |||| |||||| | |||||||||||||| ||||||||||||||||||||||||||||    
T  43810524 actcctatgcctaggttgttggataaagtaaaatacttgtctttaggttggttgaaagctagaa 43810461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 34709322 - 34709404
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||| ||||||| | | ||||||||||| |||||||| || ||||||||||||||||||||||||||| || || ||||||    
T  34709322 gtgtttcaataattcttttactcctttgcctaggttgctcgacaaagtaaaatatttgtctttaggttggctggaaactagaa 34709404  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 139 - 183
Target Start/End: Original strand, 28098391 - 28098435
Alignment:
Q  139 ctcctttgcccaggttgcttgataaagtaaaatatttgtctttag 183  Q
    ||||| |||| |||||||| |||||||| ||||||||||||||||    
T  28098391 ctcctatgcctaggttgctagataaagtgaaatatttgtctttag 28098435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 8 - 64
Target Start/End: Original strand, 34594823 - 34594879
Alignment:
Q  8 ctttagacctttgctatgtacataatcagctagagccttcattcctgaagggaatgt 64  Q
    ||||| ||||||| | || ||||||||||||| ||||||||||||||| || |||||    
T  34594823 ctttaaacctttgttgtgaacataatcagctaaagccttcattcctgagggaaatgt 34594879  T

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Target: chr7 (Bit Score: 63; Significance: 1e-27; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 21439316 - 21439398
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  21439316 gtgttttaataatcatgtgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaaggtagaa 21439398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 117 - 201
Target Start/End: Complemental strand, 6970740 - 6970656
Alignment:
Q  117 aagtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||| |||||    
T  6970740 aagtgttttaataattctgttactcctttgcccaagttgcttgacaaagtaaaatatttgtctttaggtcggttgaaagttagaa 6970656  T

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Target: chr7; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 25923785 - 25923722
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25923785 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggctgaaagctagaa 25923722  T

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Target: chr7; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 34519030 - 34519093
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  34519030 actcctttacccaggttgcttgacaaagttaaatatttgtctctaggttggttgaaagctagaa 34519093  T

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Target: chr7; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 45987764 - 45987701
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| ||||| |||||||||||| |||||||||||||||||||||    
T  45987764 actcctttacccaggttgcttgacaaagttaaatatttgtctctaggttggttgaaagctagaa 45987701  T

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Target: chr7; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 147 - 201
Target Start/End: Complemental strand, 17804651 - 17804597
Alignment:
Q  147 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||| ||||||    
T  17804651 cccagattgcttgataaagtaaaatatttgtctttaggttggttgaaaactagaa 17804597  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 198
Target Start/End: Original strand, 27941920 - 27941980
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagcta 198  Q
    |||||| |||| |||||| | || ||||||||||| |||||||||| ||||||||||||||    
T  27941920 actcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaagcta 27941980  T

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Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 194
Target Start/End: Original strand, 39060154 - 39060224
Alignment:
Q  124 ttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaa 194  Q
    ||||||||| | | |||||| |||| |||||| | || ||||||||||| |||||||||| ||||||||||    
T  39060154 ttaataattttattactcctatgcctaggttgttggacaaagtaaaatacttgtctttagcttggttgaaa 39060224  T

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Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 150 - 195
Target Start/End: Complemental strand, 7377432 - 7377387
Alignment:
Q  150 aggttgcttgataaagtaaaatatttgtctttaggttggttgaaag 195  Q
    |||||||| || ||||||||||| ||||||||||||||| ||||||    
T  7377432 aggttgctggacaaagtaaaatacttgtctttaggttggctgaaag 7377387  T

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Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Original strand, 7459106 - 7459155
Alignment:
Q  147 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    ||||||||| | |||||||| ||||||||||||||||  |||||||||||    
T  7459106 cccaggttgttagataaagttaaatatttgtctttagcctggttgaaagc 7459155  T

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Target: chr2 (Bit Score: 63; Significance: 1e-27; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 15017409 - 15017327
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||    
T  15017409 gtgttttaataatcatgtgactcctttgcccaggttgcttgacaaagtaaaatatttgtccttaggttggttgaaagttagaa 15017327  T

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Target: chr2; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 10978430 - 10978493
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10978430 actcctttacccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 10978493  T

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Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 5325492 - 5325410
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||||| || ||| ||||||| ||||||||||| |||||||||||| |||| |||||||||||||||| |||||    
T  5325492 gtgttttaataattacgttacttctttgccgaggttgcttgacaaagtaaaatatctgtccttaggttggttgaaagttagaa 5325410  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 196
Target Start/End: Original strand, 22725870 - 22725918
Alignment:
Q  148 ccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    ||||||||||  | ||||||||||||||||||||||| ||| |||||||    
T  22725870 ccaggttgctgaacaaagtaaaatatttgtctttaggatggctgaaagc 22725918  T

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Target: scaffold0108 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Complemental strand, 10623 - 10560
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10623 actcctttacccaggttgcttgacaaagtaaaatatttgtctttaggttggttgaaagctagaa 10560  T

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Target: chr8 (Bit Score: 56; Significance: 2e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 4988491 - 4988554
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  4988491 actcctttacccaggttgcttgacaaagtaaaatatttgtctttaggttggttgaaagctagaa 4988554  T

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Target: chr8; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 201
Target Start/End: Original strand, 36318916 - 36318979
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||||| ||||  ||||||||||||||||||||||| |||||||||||| ||||||||||||    
T  36318916 actcctttacccaaattgcttgataaagtaaaatatttatctttaggttggctgaaagctagaa 36318979  T

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Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 138 - 183
Target Start/End: Complemental strand, 11155232 - 11155187
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttag 183  Q
    |||||| |||| |||||||| |||||||| ||||||||||||||||    
T  11155232 actcctatgcctaggttgctagataaagtgaaatatttgtctttag 11155187  T

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Target: chr3 (Bit Score: 55; Significance: 8e-23; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 119 - 201
Target Start/End: Complemental strand, 51144798 - 51144716
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||| ||||||| | | |||||||||||||||||||| |  ||||||||||||||||||||||||||||||||||||||||    
T  51144798 gtgtttcaataattctattactcctttgcccaggttgctcggcaaagtaaaatatttgtctttaggttggttgaaagctagaa 51144716  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 117 - 201
Target Start/End: Original strand, 20894159 - 20894243
Alignment:
Q  117 aagtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||||  |||| ||||||||||||||||||||||| |||||||||||| | || ||| ||||||||||||||||||    
T  20894159 aagtgttttaataaccatgttactcctttgcccaggttgcttgacaaagtaaaatatctatccttaagttggttgaaagctagaa 20894243  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 137 - 198
Target Start/End: Original strand, 54558854 - 54558915
Alignment:
Q  137 cactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagcta 198  Q
    ||||||| |||| | |||| | |||||||||||||||||||||||| |||||||||||||||    
T  54558854 cactcctatgcctaagttgttagataaagtaaaatatttgtctttaagttggttgaaagcta 54558915  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 134 - 196
Target Start/End: Complemental strand, 50543939 - 50543877
Alignment:
Q  134 tgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    ||||||| || ||||||||||| | |||||||| |||||| |||||||||  |||||||||||    
T  50543939 tgtcacttctatgcccaggttgttagataaagttaaatatatgtctttagcctggttgaaagc 50543877  T

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Target: chr5 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 11575100 - 11575182
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    ||||||||||||| |||| |||| ||||||||| || ||||| ||||||||||||||||| |||| |||||||||||||||||    
T  11575100 gtgttttaataatcatgtgactcgtttgcccagattacttgacaaagtaaaatatttgtccttagattggttgaaagctagaa 11575182  T

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Target: chr5; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 119 - 201
Target Start/End: Original strand, 22095657 - 22095739
Alignment:
Q  119 gtgttttaataattatgtcactcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagctagaa 201  Q
    |||||| ||||||| | | | ||||||| |||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  22095657 gtgtttcaataattctattattcctttgtccaggttgctcgacaaagtaaaatatttgtctttaggttggttgaaagctagaa 22095739  T

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Target: chr5; HSP #3
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 138 - 189
Target Start/End: Original strand, 5415571 - 5415622
Alignment:
Q  138 actcctttgcccaggttgcttgataaagtaaaatatttgtctttaggttggt 189  Q
    |||||||| ||||||||||||||||||||||||||||||| |||||||||||    
T  5415571 actcctttacccaggttgcttgataaagtaaaatatttgtgtttaggttggt 5415622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 196
Target Start/End: Complemental strand, 40090044 - 40089995
Alignment:
Q  147 cccaggttgcttgataaagtaaaatatttgtctttaggttggttgaaagc 196  Q
    ||||||||| | |||||||| |||||| ||||||||| ||||||||||||    
T  40090044 cccaggttgttagataaagtcaaatatatgtctttagcttggttgaaagc 40089995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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