View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2366_high_3 (Length: 331)
Name: NF2366_high_3
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2366_high_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 1 - 316
Target Start/End: Original strand, 13886850 - 13887176
Alignment:
| Q |
1 |
caactatggagtcattgtgtgttatcctttagttgagagcaataaattgttcgaaaggcagatatacgcatttaaggggttgaagaaagtatggaataac |
100 |
Q |
| |
|
|||||||| |||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13886850 |
caactatgtagtcgttgtgtgttatcctctagttgagagcaataaattgttcgaaaggcagatatacgcatttaaggggttgaagaaagtatggaataac |
13886949 |
T |
|
| Q |
101 |
taataggattacgtaaatta-----------gaggcaagtgaatcttcaagagtgagaaaatgatcactcaaaaagttgaagaggttatggtgaagtaac |
189 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
13886950 |
taataggattacgtaaaatccaagggtaattgaggcaagtgaatcttcaagagtgagaaaatgatcactccaaaagttgaagaggttatggtgaagtaac |
13887049 |
T |
|
| Q |
190 |
taaacatcataaggtagttggtaagaaagtgagtctcctcgaatttgggtatgtataatcactctagtttggttgttgctagttttgctccacatatcac |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| |||||||||||||||||| |
|
|
| T |
13887050 |
taaacatcataaggtagttggtaagaaagtgagtctcctcgaatttgggtatgtataatcactctaggttggttgtttctaattttgctccacatatcac |
13887149 |
T |
|
| Q |
290 |
tagacactttgtattcatttcaacaat |
316 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13887150 |
tagacactttgtattcatttcaacaat |
13887176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University