View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2366_high_5 (Length: 307)
Name: NF2366_high_5
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2366_high_5 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 13886539 - 13886841
Alignment:
| Q |
1 |
gaatgaaatatgtccacttattattaattcacacaaagtcacaacaataagaaagttatatgtacaaataaaatcacctaaaatagtaacgaaagatata |
100 |
Q |
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| T |
13886539 |
gaatgaaatatgtacacttattattaattcacacaaagtcacaacaataagaaagttatatgtacaaataaaatcacctaaaatagtaacgaaagatata |
13886638 |
T |
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| Q |
101 |
tacgacaaacatatattttgatatatggaaatttattatggtaaatttggggtgttacagaggacactcatgatcggccttagaggtggaggttacaagt |
200 |
Q |
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| T |
13886639 |
tacgacaaacatatattttgatatatggaaatttattatggtaaatttggggtgttacagaggacactcataatcggccttagaggtggaggttacaagt |
13886738 |
T |
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| Q |
201 |
gaaagatatactgagaatgcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccacaactgggattaaaaggaaacaaatggtggca |
300 |
Q |
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| T |
13886739 |
gaaagatatactgagaatgcatttgaaagtggatgtggagaaatcttagcttgaggtggagtcttccacaattgggattaaaaggaaacaaatggtggca |
13886838 |
T |
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| Q |
301 |
tca |
303 |
Q |
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||| |
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| T |
13886839 |
tca |
13886841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 262
Target Start/End: Complemental strand, 43403212 - 43403172
Alignment:
| Q |
222 |
tttggaagtggatgtggagaaatcttagcttgaggtggagt |
262 |
Q |
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| T |
43403212 |
tttggaagttgaggtggagaaatctcagcttgaggtggagt |
43403172 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 219 - 269
Target Start/End: Original strand, 16676812 - 16676862
Alignment:
| Q |
219 |
gcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccac |
269 |
Q |
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| T |
16676812 |
gcatttggaagttgaggtggagaaatcctaacttgaggtggagtcttccac |
16676862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 166 - 199
Target Start/End: Original strand, 28861818 - 28861851
Alignment:
| Q |
166 |
actcatgatcggccttagaggtggaggttacaag |
199 |
Q |
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| T |
28861818 |
actcatgatcggccttagaggtggaggttacaag |
28861851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 219 - 269
Target Start/End: Complemental strand, 7858589 - 7858539
Alignment:
| Q |
219 |
gcatttggaagtggatgtggagaaatcttagcttgaggtggagtcttccac |
269 |
Q |
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| T |
7858589 |
gcatttggaagttgagatggagaaaacttagcttgaggtgtagtcttccac |
7858539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 160
Target Start/End: Complemental strand, 5044237 - 5044095
Alignment:
| Q |
21 |
ttattaattcacacaaagtcacaacaataagaaagttatatgtacaaataaaatcacctaaaatagtaacgaaagatatatacgacaaacatatattttg |
120 |
Q |
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||||||||||||| | ||||||| |||||| || || |||||||||||||||||| ||||||| |||| | |||| |||| | ||||||| ||| |
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| T |
5044237 |
ttattaattcacaagatgtcacaataataagcaaaatacatgtacaaataaaatcacttaaaataataactagagatttatatcatgaacatattatttt |
5044138 |
T |
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| Q |
121 |
atatat---ggaaatttattatggtaaatttggggtgttacag |
160 |
Q |
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|||||| | |||| |||||||| |||||| ||||||||||| |
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| T |
5044137 |
atatatatagaaaatatattatggaaaattttgggtgttacag |
5044095 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 159
Target Start/End: Complemental strand, 26799 - 26710
Alignment:
| Q |
71 |
aaatcacctaaaatagtaacgaaagatatatacgacaaacatatattttgatatat-ggaaatttattatggtaaatttggggtgttaca |
159 |
Q |
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||||||| ||||||| |||| |||||| ||||| | ||||||||||| |||||| | |||| |||||||| ||||||| ||||||||| |
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| T |
26799 |
aaatcacttaaaataataactaaagatttataccatgaacatatatttaaatatatagaaaatatattatggaaaatttgaggtgttaca |
26710 |
T |
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