View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2366_high_9 (Length: 257)
Name: NF2366_high_9
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2366_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 203; Significance: 1e-111; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 17 - 235
Target Start/End: Original strand, 26490639 - 26490857
Alignment:
| Q |
17 |
aaaaggggtatggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtatttttaacaataaggcttttgaggtggaggatatg |
116 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26490639 |
aaaaggggcatggttgatttggcatgcggtgatttgggtggtttggaggtgtcgtaatagttgtatttttaacaataaggcttttgaggtggaggatatg |
26490738 |
T |
|
| Q |
117 |
gtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttggaaccctcgcttctgtc |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
26490739 |
gtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagcggtgttggaaccctcgcttctgtc |
26490838 |
T |
|
| Q |
217 |
ttggtgcttaattagggcc |
235 |
Q |
| |
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|| |||||||||||||||| |
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| T |
26490839 |
ttagtgcttaattagggcc |
26490857 |
T |
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Target: chr8 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 53 - 207
Target Start/End: Original strand, 13855562 - 13855716
Alignment:
| Q |
53 |
ggtggtttggaggtctcgtaatagttgtatttttaacaataaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagc |
152 |
Q |
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|||||||||| |||||||||||||||||||||||| |||||| | ||||||||||||| |||||||| |||||||||||| |||| || |||||||| |
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| T |
13855562 |
ggtggtttggttgtctcgtaatagttgtatttttaataataagattattgaggtggaggaaatggtggatcaaatcaaagtgttgtcgtgacaatggagt |
13855661 |
T |
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| Q |
153 |
ttggctagattgcatattgcaacttgtttattttacgagtggtgttggaaccctc |
207 |
Q |
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| T |
13855662 |
ttggctagattgaacattgcgacgtgtttattctatgagtggtgttggaatcctc |
13855716 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 74; Significance: 5e-34; HSPs: 7)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 71 - 208
Target Start/End: Complemental strand, 30635297 - 30635160
Alignment:
| Q |
71 |
taatagttgtatttttaacaataaggcttttgaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatatt |
170 |
Q |
| |
|
||||| |||||||||||| |||||| | |||||||||||||||||||||| |||||||||||| || | |||||||| ||||||||||||||| | ||| |
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| T |
30635297 |
taataattgtatttttaataataagattattgaggtggaggatatggtggatcaaatcaaagtgttggcgtggcaatgaagcttggctagattgaacatt |
30635198 |
T |
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| Q |
171 |
gcaacttgtttattttacgagtggtgttggaaccctcg |
208 |
Q |
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|| || |||||||| |||||||||| |||||||||||| |
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| T |
30635197 |
gcgacgtgtttattctacgagtggtattggaaccctcg |
30635160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 102 - 217
Target Start/End: Complemental strand, 6945353 - 6945238
Alignment:
| Q |
102 |
gaggtggaggatatggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttgga |
201 |
Q |
| |
|
|||||||| || |||||||| ||| | || ||||| || |||||||| || ||| ||| ||| | |||||||||||||| |||||||||||||| |||| |
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| T |
6945353 |
gaggtggatgagatggtggatcaagttaaggtgctctcgtggcaatgaagtttgagtaggttgaacattgcaacttgtttgttttacgagtggtgatgga |
6945254 |
T |
|
| Q |
202 |
accctcgcttctgtct |
217 |
Q |
| |
|
|||||||||| ||||| |
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| T |
6945253 |
accctcgcttttgtct |
6945238 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 155
Target Start/End: Original strand, 17778567 - 17778695
Alignment:
| Q |
27 |
tggttgatttggcatgcggtgatttgggtggtttggaggtctcgtaatagttgtatttttaacaataaggcttttgaggtggaggatatggtggaccaaa |
126 |
Q |
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||||||||||||||||||||| ||| | ||||||||| | | |||| | |||||||| |||||| ||||| |||||| || ||||||| |||| |
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| T |
17778567 |
tggttgatttggcatgcggtggtttagatggtttggaaggtgaggaataatctgatttttaataataagatttttggggtggatgagttggtggaacaaa |
17778666 |
T |
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| Q |
127 |
tcaaagtgctgtcatggcaatggagcttg |
155 |
Q |
| |
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| |||||| |||||||||||||||||||| |
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| T |
17778667 |
ttaaagtgttgtcatggcaatggagcttg |
17778695 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 115 - 202
Target Start/End: Original strand, 30456198 - 30456285
Alignment:
| Q |
115 |
tggtggaccaaatcaaagtgctgtcatggcaatggagcttggctagattgcatattgcaacttgtttattttacgagtggtgttggaa |
202 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||| |||| ||||||| | || | ||||||||||||||||| ||||||||||| |
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| T |
30456198 |
tggtggatcaaatcaaagttctagcgtggcaatggagtttggatagattgaagatagagacttgtttattttacgaatggtgttggaa |
30456285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 27 - 63
Target Start/End: Original strand, 20988933 - 20988969
Alignment:
| Q |
27 |
tggttgatttggcatgcggtgatttgggtggtttgga |
63 |
Q |
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| T |
20988933 |
tggttgatttggcatgcggtggtttgggtggtttgga |
20988969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 175 - 211
Target Start/End: Original strand, 20990828 - 20990864
Alignment:
| Q |
175 |
cttgtttattttacgagtggtgttggaaccctcgctt |
211 |
Q |
| |
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|||||||||| |||||||||||||||||||||||||| |
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| T |
20990828 |
cttgtttattctacgagtggtgttggaaccctcgctt |
20990864 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Original strand, 29127638 - 29127674
Alignment:
| Q |
17 |
aaaaggggtatggttgatttggcatgcggtgatttgg |
53 |
Q |
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||||||||| ||||||||||||||||||||| ||||| |
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| T |
29127638 |
aaaaggggtgtggttgatttggcatgcggtggtttgg |
29127674 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 175 - 220
Target Start/End: Original strand, 43460262 - 43460307
Alignment:
| Q |
175 |
cttgtttattttacgagtggtgttggaaccctcgcttctgtcttgg |
220 |
Q |
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||||||| |||||||||||||| ||||| |||||||| |||||||| |
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| T |
43460262 |
cttgtttgttttacgagtggtgctggaatcctcgcttttgtcttgg |
43460307 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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