View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2366_low_1 (Length: 377)
Name: NF2366_low_1
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2366_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 321; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 13 - 337
Target Start/End: Complemental strand, 35560119 - 35559795
Alignment:
| Q |
13 |
tacttctgtggtattaggtccggtaactacagtatcctctgttgggacactgtttcatcaaacacaacgtttgaaacaagaaggctttacaacaacaaca |
112 |
Q |
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| T |
35560119 |
tacttctgtggtattaggtccggtaactacagtatcctctgttgggacactgtttcatcaaacacaacgtttgaaacaagaaggctttacaacaacaaca |
35560020 |
T |
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| Q |
113 |
atggcactgttctatacgagaatcttgctgttggtgattcacatgtttgtgctacaatggttaatgttggaaacgttgcttgttggagaatgaataaagg |
212 |
Q |
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| T |
35560019 |
atggaactgttctatacgagaatcttgctgttggtgattcacatgtttgtgctacaatggttaatgttggaaacgttgcttgttggagaatgaataaagg |
35559920 |
T |
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| Q |
213 |
ttttgttttgccatctgggtttgatcaattttcttcaataacttctgggtttggtttcacttgtggaattttgaagaaaaatgattctgggtcggttcgt |
312 |
Q |
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| T |
35559919 |
ttttgttttgccatctgggtttgatcaattttcttcaataacttctgggtttggtttcacttgtggaattttgaagaaaaatgattctgggtcggttcgt |
35559820 |
T |
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| Q |
313 |
tgttttggtaatgtgaatgtgaatg |
337 |
Q |
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| T |
35559819 |
tgttttggtaatgtgaatgtgaatg |
35559795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 328 - 360
Target Start/End: Complemental strand, 35559810 - 35559778
Alignment:
| Q |
328 |
aatgtgaatgtgaatgaatcttccattgctgag |
360 |
Q |
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| T |
35559810 |
aatgtgaatgtgaatgaatcttccattgctgag |
35559778 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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