View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2366_low_4 (Length: 325)

Name: NF2366_low_4
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2366_low_4
NF2366_low_4
[»] chr8 (5 HSPs)
chr8 (6-180)||(13909096-13909268)
chr8 (1-61)||(36318985-36319045)
chr8 (114-179)||(4988655-4988720)
chr8 (130-179)||(36319096-36319145)
chr8 (21-61)||(4988580-4988620)
[»] chr6 (10 HSPs)
chr6 (1-179)||(33019450-33019626)
chr6 (1-180)||(5086518-5086695)
chr6 (123-180)||(15644225-15644282)
chr6 (114-180)||(504121-504187)
chr6 (1-61)||(504026-504086)
chr6 (9-61)||(1334793-1334845)
chr6 (8-61)||(8263831-8263884)
chr6 (1-61)||(19227099-19227159)
chr6 (130-180)||(19226998-19227048)
chr6 (21-61)||(33639503-33639543)
[»] chr1 (9 HSPs)
chr1 (1-180)||(7178354-7178531)
chr1 (114-179)||(25505583-25505648)
chr1 (1-61)||(24314605-24314665)
chr1 (11-61)||(43810395-43810445)
chr1 (1-84)||(25505488-25505568)
chr1 (114-180)||(24314504-24314570)
chr1 (113-180)||(34709520-34709591)
chr1 (9-61)||(22576415-22576467)
chr1 (2-58)||(34709411-34709467)
[»] chr7 (15 HSPs)
chr7 (1-179)||(21439404-21439580)
chr7 (1-127)||(6970526-6970650)
chr7 (113-179)||(6970402-6970468)
chr7 (9-61)||(7377315-7377367)
chr7 (1-61)||(17804531-17804591)
chr7 (1-61)||(25923656-25923716)
chr7 (9-61)||(27941997-27942049)
chr7 (8-80)||(33796869-33796941)
chr7 (114-179)||(25923556-25923621)
chr7 (130-179)||(45987534-45987583)
chr7 (1-61)||(34519099-34519159)
chr7 (129-180)||(14053994-14054045)
chr7 (129-180)||(14364022-14364073)
chr7 (1-61)||(45987635-45987695)
chr7 (130-180)||(34519210-34519260)
[»] chr2 (5 HSPs)
chr2 (1-179)||(15017144-15017321)
chr2 (1-180)||(5325231-5325404)
chr2 (190-309)||(43702324-43702465)
chr2 (265-309)||(43713245-43713289)
chr2 (21-61)||(10978520-10978560)
[»] chr3 (3 HSPs)
chr3 (1-180)||(20894249-20894426)
chr3 (2-179)||(51144534-51144709)
chr3 (13-61)||(54558936-54558984)
[»] chr4 (15 HSPs)
chr4 (3-180)||(19113903-19114079)
chr4 (1-179)||(30309917-30310091)
chr4 (10-180)||(48031646-48031812)
chr4 (118-179)||(7472893-7472954)
chr4 (114-172)||(33988358-33988416)
chr4 (114-179)||(8934587-8934652)
chr4 (130-179)||(19644476-19644525)
chr4 (123-180)||(23118920-23118977)
chr4 (1-61)||(7472992-7473052)
chr4 (9-61)||(29554243-29554295)
chr4 (123-179)||(49926538-49926594)
chr4 (3-61)||(23119021-23119079)
chr4 (1-84)||(8934667-8934747)
chr4 (1-84)||(33988263-33988343)
chr4 (21-61)||(19644576-19644616)
[»] chr5 (5 HSPs)
chr5 (4-179)||(11575190-11575364)
chr5 (16-84)||(22095760-22095825)
chr5 (123-180)||(22095895-22095952)
chr5 (21-61)||(5415662-5415702)
chr5 (146-179)||(5415730-5415763)
[»] scaffold0108 (2 HSPs)
scaffold0108 (124-180)||(10393-10449)
scaffold0108 (1-61)||(10494-10554)


Alignment Details
Target: chr8 (Bit Score: 126; Significance: 6e-65; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 6 - 180
Target Start/End: Complemental strand, 13909268 - 13909096
Alignment:
Q  6 tatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggtgt 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||| |||||| ||| |||||||||    
T  13909268 tatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctga---gttggttttgttgttgtactgacttctacatttcggtgt 13909172  T
Q  106 t-cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    | |||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||||    
T  13909171 ttcttgatgagtctttgaggcacgccttgtgctaataaggctcttgttgttaatataatttcatttttgattgttc 13909096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 36318985 - 36319045
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||||| |  |||||||||||||| ||||||||||||||| ||||||||||    
T  36318985 tcttttttgtttggtagttttagttggtggtcaaaccctttacaatgtttaggtattggct 36319045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 4988655 - 4988720
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||||||| |||||  ||||||||| |||| ||||||||  ||||||||||| |||||||||||||    
T  4988655 agtctttatggcacatcttgtgctattgagactcttgttggtaatataattctatttttgattgtt 4988720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 179
Target Start/End: Original strand, 36319096 - 36319145
Alignment:
Q  130 cttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    ||||||||| |||| |||||||| |||||||||| |||||||||||||||    
T  36319096 cttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 36319145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 4988580 - 4988620
Alignment:
Q  21 tagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  4988580 tagttggtggtcaaacccgttacaatgtttgggtattggct 4988620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 126; Significance: 6e-65; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 6e-65
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 33019626 - 33019450
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||||||||||||| ||| |||||| ||| ||||    
T  33019626 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttggttttgttgtagtactgacttctacatttc 33019530  T
Q  101 ggtg-ttcttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||||    
T  33019529 ggtgtttcttgatgagtctttgaggcacgccttgtgctaatgaggctcttgttgttaatataattacattttttattgtt 33019450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 5086518 - 5086695
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    |||||| ||||||| |||| ||| |||||||||| |||||||||||||||| ||||||||| |   ||||||||||||||||||  ||||| |   |||     
T  5086518 tcttttttgtttggcactattagatggtggtcaacccctttacaatgtttgagtattggctaa---gttggttttgttgttgtacagacttctgaatttt 5086614  T
Q  101 ggtgttc-ttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    | |  || |||| || ||||| ||||| |||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  5086615 gttcctccttgaggaatctttgaggcatgccttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 5086695  T

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Target: chr6; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 15644225 - 15644282
Alignment:
Q  123 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  15644225 ggcacgtcttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 15644282  T

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Target: chr6; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 114 - 180
Target Start/End: Original strand, 504121 - 504187
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||||  |||||| ||||||||| |||| |||||||| |||||||||||||||||||||||||||    
T  504121 agtctttgtggcacgtcttgtgctattgagactcttgttgttaatataattccatttttgattgttc 504187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 504026 - 504086
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| |||||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  504026 tcttttttgtttggtacttttagttggtggtcaaacccgttacaatgtttgggtattggct 504086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 1334793 - 1334845
Alignment:
Q  9 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  1334793 gtttggtactgataggtggtggtcaagcccttttcaatgtttgggtattggct 1334845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 8 - 61
Target Start/End: Complemental strand, 8263884 - 8263831
Alignment:
Q  8 tgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  8263884 tgtttggtacttttagttggtggtcaaacccgttacaatgtttgggtattggct 8263831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 19227159 - 19227099
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||| |||  |||||||||||||| ||| ||||||||||||||||||||||    
T  19227159 tcttttttgtttggcacttttagttggtggtcaaacccgttacaatgtttgggtattggct 19227099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 130 - 180
Target Start/End: Complemental strand, 19227048 - 19226998
Alignment:
Q  130 cttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    ||||||||| |||| |||||||| ||||| |||||||||||||||||||||    
T  19227048 cttgtgctattgagactcttgttgttaatttaattccatttttgattgttc 19226998  T

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Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 33639543 - 33639503
Alignment:
Q  21 tagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||||||| ||| ||||||||||||||||| ||||    
T  33639543 tagttggtggtcaaacccgttacaatgtttgggtatcggct 33639503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 119; Significance: 9e-61; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 7178531 - 7178354
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||   |||||||| ||||||||| |||||| |||||||     
T  7178531 tcttttatatttggcactaatagttggtggtcaagccctttacaatgtttgggtattggctga---gttggtttcgttgttgtactgacttctacttttt 7178435  T
Q  101 ggtgtt-cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||| ||||| |||||||| |||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  7178434 ggtgtttcttgacgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 7178354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 114 - 179
Target Start/End: Original strand, 25505583 - 25505648
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||||||  |||||| |||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  25505583 agtctttgtggcacgtcttgtgctaatgagactcttgttgttaatataattccatttttaattgtt 25505648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 24314665 - 24314605
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||| |||| |||||||||||||| ||| ||||||||||||||||||||||    
T  24314665 tcttttttgtttggcactattagttggtggtcaaacccgttacaatgtttgggtattggct 24314605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 43810445 - 43810395
Alignment:
Q  11 ttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  43810445 ttggtactgataggtggtggtcaagccctttccaatgtttgggtattggct 43810395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 25505488 - 25505568
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 84  Q
    |||||| ||||||| |||  |||||||||||||| ||| |||||||||||||||||||||| |    |||||||||||||||||    
T  25505488 tcttttttgtttggcacttttagttggtggtcaaacccgttacaatgtttgggtattggctaac---ttggttttgttgttgta 25505568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 180
Target Start/End: Complemental strand, 24314570 - 24314504
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||||  |||||| ||||||||| |||| ||| |||| ||||||||||| |||||||||||||||    
T  24314570 agtctttgtggcacgtcttgtgctagtgagactcctgttgttaatataatttcatttttgattgttc 24314504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 180
Target Start/End: Original strand, 34709520 - 34709591
Alignment:
Q  113 gagtctttaaggcacgccttgtgctaatgaggctcttgt----tattaatataattccatttttgattgttc 180  Q
    ||||||||  |||||| ||||||||| |||| |||||||    | |||||||||||||||||||||||||||    
T  34709520 gagtctttgtggcacgtcttgtgctattgagactcttgtgtgctgttaatataattccatttttgattgttc 34709591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 22576467 - 22576415
Alignment:
Q  9 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    ||||||| || ||||  |||||||||||||||| ||||||||||| |||||||    
T  22576467 gtttggttctgatagggggtggtcaagcccttttcaatgtttgggcattggct 22576415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 58
Target Start/End: Original strand, 34709411 - 34709467
Alignment:
Q  2 cttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattg 58  Q
    ||||| ||||||| ||| |||| |||| ||||||||||||||||||| |||| ||||    
T  34709411 cttttttgtttggcactgataggtggttgtcaagccctttacaatgtctgggcattg 34709467  T

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Target: chr7 (Bit Score: 110; Significance: 2e-55; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 179
Target Start/End: Original strand, 21439404 - 21439580
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||   ||||||||||| ||||||||| |||||| |||||||     
T  21439404 tcttttatgcttggcactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttggtttcgttgttgtactgacttctacttttt 21439500  T
Q  101 ggtg-ttcttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||| ||||||| |||||||| |||||||||||| ||||||||| |||||||| ||||||||||| ||||||||||||||    
T  21439501 ggtgtttcttgacgagtctttgaggcacgccttgcgctaatgagactcttgttgttaatataatttcatttttgattgtt 21439580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 6970650 - 6970526
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||||||| ||||||||||||| |||||| ||| |||     
T  6970650 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagttgattttgttgttgtactgacttctacatttt 6970554  T
Q  101 ggtg-ttcttgatgagtctttaaggcac 127  Q
    |||| |||| || |||||||| ||||||    
T  6970553 ggtgtttctggacgagtctttgaggcac 6970526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 113 - 179
Target Start/End: Complemental strand, 6970468 - 6970402
Alignment:
Q  113 gagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||||||| |||||||||||||||||| |||||||||||| ||||||||||| ||||||||||||||    
T  6970468 gagtctttgaggcacgccttgtgctaacgaggctcttgttgttaatataatttcatttttgattgtt 6970402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Complemental strand, 7377367 - 7377315
Alignment:
Q  9 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  7377367 gtttggtactgataggtggtggtcaagccctttccaatgtttgggtattggct 7377315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 17804591 - 17804531
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| |||||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  17804591 tcttttttgtttggtacttttagttggtggtcaaacccgttacaatgtttgggtattggct 17804531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 25923716 - 25923656
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| |||||||||||  |||||||||||||| ||| ||||||||||||||||||||||    
T  25923716 tcttttttgtttggtacttttagttggtggtcaaacccgttacaatgtttgggtattggct 25923656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 27941997 - 27942049
Alignment:
Q  9 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  27941997 gtttggtactgataggtggtggtcaagcccttttcaatgtttgggtattggct 27942049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 8 - 80
Target Start/End: Original strand, 33796869 - 33796941
Alignment:
Q  8 tgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgt 80  Q
    ||||||||||  |||| ||||| ||||||||||| ||||||||||||||||||| || ||||| |||||||||    
T  33796869 tgtttggtacagataggtggtgttcaagcccttttcaatgtttgggtattggctaattagttgcttttgttgt 33796941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 25923621 - 25923556
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||||||  |||||| ||||||||| |||| |||||||| |||||||||| |||||||||||||||    
T  25923621 agtctttgtggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttgattgtt 25923556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 45987583 - 45987534
Alignment:
Q  130 cttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  45987583 cttgtgctattgagactcttgttgttaatataattccatttttgattgtt 45987534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Original strand, 34519099 - 34519159
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||| |||  |||||||||||||| ||| ||||||||||||||||||||||    
T  34519099 tcttttttgtttggcacttttagttggtggtcaaacccgttacaatgtttgggtattggct 34519159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 14054045 - 14053994
Alignment:
Q  129 ccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||||||| |||| ||||| || |||||||||||||||||||||||||||    
T  14054045 ccttgtgctattgagactcttattgttaatataattccatttttgattgttc 14053994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 129 - 180
Target Start/End: Complemental strand, 14364073 - 14364022
Alignment:
Q  129 ccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||||||| |||| ||||| || |||||||||||||||||||||||||||    
T  14364073 ccttgtgctattgagactcttattgttaatataattccatttttgattgttc 14364022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 45987695 - 45987635
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||| |||  |||||||||||||| ||| ||| ||||||||||||||||||    
T  45987695 tcttttttgtttggcacttttagttggtggtcaaacccgttataatgtttgggtattggct 45987635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 180
Target Start/End: Original strand, 34519210 - 34519260
Alignment:
Q  130 cttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    ||||||||| |||| |||||||| ||||||| ||| |||||||||||||||    
T  34519210 cttgtgctattgagactcttgttgttaatattatttcatttttgattgttc 34519260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 3e-54; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 15017321 - 15017144
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||   |||||||| ||||||||| |||||| |||||||     
T  15017321 tcttttatgtttgacactaatagttggtggtcaagccctttacaatgtttgggtattggttga---gttggtttcgttgttgtactgacttctacttttt 15017225  T
Q  101 ggtgtt--cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    ||||||  ||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||| ||||||    
T  15017224 ggtgttttcttgacgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataattccattttttattgtt 15017144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5325404 - 5325231
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||   |||||||| |||||||||    ||| |||||||     
T  5325404 tcttttatgtttggcactaatagttggtggtcaagccctttacaatgtttggatattggctga---gttggtttcgttgttgta----cttctacttttt 5325312  T
Q  101 ggtgtt-cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||| ||||| |||||||| |||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||||    
T  5325311 ggtgtttcttgacgagtctttgaggcacgccttgtgctaatgagactcttgttgttaatataatttcatttttgattgttc 5325231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 190 - 309
Target Start/End: Original strand, 43702324 - 43702465
Alignment:
Q  190 gatatattccaatgtatgaaaaagaagcatacaaaggaagtatgttccgccacttggt----------------------tattggtataataaagcctc 267  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                      ||||||||||||||||||||    
T  43702324 gatatattccaatgtatgaaaaagaagcatacaaaggaagtatgttccgccacttggtatattcaattaaattcagaaattattggtataataaagcctc 43702423  T
Q  268 ttttttgtttgttgttatagggaatgtcactgctgtggttaa 309  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  43702424 ttttttgtttgttgttatagggaatgtcactgctgtggttaa 43702465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 43713245 - 43713289
Alignment:
Q  265 ctcttttttgtttgttgttatagggaatgtcactgctgtggttaa 309  Q
    ||||||||||||||||||||||||||||||||||| |||||||||    
T  43713245 ctcttttttgtttgttgttatagggaatgtcactgttgtggttaa 43713289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 10978520 - 10978560
Alignment:
Q  21 tagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||||||| ||| |||||||||||| |||||||||    
T  10978520 tagttggtggtcaaacccgttacaatgtttgagtattggct 10978560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 20894249 - 20894426
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||   |||| |||||| ||||||||| |||||| |||||||     
T  20894249 tcttttatatttggcactaatagttggtggtcaagccctttacaatgtttgggtattggc---tgagatggtttcgttgttgtactgacttctacttttt 20894345  T
Q  101 ggtg-ttcttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||| ||||||| |||||||| ||||||||||| |||||||||| |||||||| ||||||||||||||||||| |||||||    
T  20894346 ggtgtttcttgacgagtctttgaggcacgccttatgctaatgagactcttgttgttaatataattccatttttaattgttc 20894426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 2 - 179
Target Start/End: Complemental strand, 51144709 - 51144534
Alignment:
Q  2 cttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgact--tgtactttt 99  Q
    ||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||||||||| ||||  || |||||     
T  51144709 cttttttgtttggcactaatagttggtggtcaagccctttacaatgtctgggtattggctaat---ttggttttgttgttgtaaagactactgaactttg 51144613  T
Q  100 cggtgttcttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
      || ||||||| |||||||   |||||| |||||||||||||| |||| ||| || |||||||||||||||| ||||||    
T  51144612 ttgt-ttcttgaggagtcttggtggcacgtcttgtgctaatgagactctggttgtttatataattccattttttattgtt 51144534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 13 - 61
Target Start/End: Original strand, 54558936 - 54558984
Alignment:
Q  13 ggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  54558936 ggtactgataggtggtggtcaagccctttccaatgtttgggtattggct 54558984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 91; Significance: 4e-44; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 3 - 180
Target Start/End: Complemental strand, 19114079 - 19113903
Alignment:
Q  3 ttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcgg 102  Q
    |||||||||||| ||| |||||||||| ||||||||||||||||||||| |||||||||||   |||||| | ||||||||  |||||| ||||||| ||    
T  19114079 ttttatgtttggcactcatagttggtgatcaagccctttacaatgtttgagtattggctga---gttggtgtcgttgttgttctgacttctactttttgg 19113983  T
Q  103 tgtt--cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    ||||  ||||| |||||||| ||||| |||||||||||||||  |||||||| |||||||||||||||||||||||||||    
T  19113982 tgttttcttgacgagtctttgaggcatgccttgtgctaatgacactcttgttgttaatataattccatttttgattgttc 19113903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 30310091 - 30309917
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttc 100  Q
    |||||||||||||| ||| ||   |||||||||| ||||||||||||||||| ||||||||||   |||||| | ||||||||| |||||| |||||||     
T  30310091 tcttttatgtttggcactcat---tggtggtcaaaccctttacaatgtttggatattggctga---gttggtgtcgttgttgtattgacttctacttttt 30309998  T
Q  101 ggtgtt--cttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    ||||||  ||||| |||||||| |||||||||||||||||| ||| |||||||| ||||||||||||||||||||||||||    
T  30309997 ggtgttttcttgacgagtctttgaggcacgccttgtgctaacgagactcttgttgttaatataattccatttttgattgtt 30309917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 10 - 180
Target Start/End: Original strand, 48031646 - 48031812
Alignment:
Q  10 tttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgact--tgtacttttcggtgttc 107  Q
    ||||| |||||||| |||||| |||||| |||||||| | |||||||||||| |   ||||||||||||||||||   |||  || ||||| | || |||    
T  48031646 tttggcactaatagatggtgggcaagcc-tttacaatttctgggtattggctaa---gttggttttgttgttgtagatactcctgaactttgctgt-ttc 48031740  T
Q  108 ttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    ||||  |||||||  |||||||||||||||| |||| |||||||| |||||||||||||| ||||||||||||    
T  48031741 ttgactagtctttgtggcacgccttgtgctattgagactcttgttgttaatataattcca-ttttgattgttc 48031812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 118 - 179
Target Start/End: Complemental strand, 7472954 - 7472893
Alignment:
Q  118 tttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||| |||||| ||||||||| |||| |||||||||||||||||||||||||||| ||||||    
T  7472954 tttatggcacgtcttgtgctattgagactcttgttattaatataattccattttttattgtt 7472893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 114 - 172
Target Start/End: Original strand, 33988358 - 33988416
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccattttt 172  Q
    |||||||  |||||| |||||||||||||| |||||||| |||||||||||||||||||    
T  33988358 agtctttgtggcacgtcttgtgctaatgagactcttgttgttaatataattccattttt 33988416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 114 - 179
Target Start/End: Complemental strand, 8934652 - 8934587
Alignment:
Q  114 agtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||||||  |||||| ||||||||| |||| || ||||| ||||||||||||||||||||||||||    
T  8934652 agtctttgtggcacgtcttgtgctattgagactattgttgttaatataattccatttttgattgtt 8934587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 179
Target Start/End: Complemental strand, 19644525 - 19644476
Alignment:
Q  130 cttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    ||||||||| |||| |||||||| ||||||||||||||||||||||||||    
T  19644525 cttgtgctattgagactcttgttgttaatataattccatttttgattgtt 19644476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 180
Target Start/End: Complemental strand, 23118977 - 23118920
Alignment:
Q  123 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    |||||| ||||||||| |||| |||||||| |||||||||| ||||||||||||||||    
T  23118977 ggcacgtcttgtgctattgagactcttgttgttaatataatcccatttttgattgttc 23118920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 7473052 - 7472992
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||| |||  |||||||||||||| ||| ||||||||||||||||||||||    
T  7473052 tcttttttgtttggcacttttagttggtggtcaaacccgttacaatgtttgggtattggct 7472992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 9 - 61
Target Start/End: Original strand, 29554243 - 29554295
Alignment:
Q  9 gtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||| |||| ||||||||||||||||| ||||||||| |||||||||    
T  29554243 gtttggtactgataggtggtggtcaagcccttttcaatgtttgagtattggct 29554295  T

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Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 123 - 179
Target Start/End: Original strand, 49926538 - 49926594
Alignment:
Q  123 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |||||| |||||||||||||| |||||||| |||||||||||| |||||| ||||||    
T  49926538 ggcacgtcttgtgctaatgagactcttgttgttaatataattctattttttattgtt 49926594  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 61
Target Start/End: Complemental strand, 23119079 - 23119021
Alignment:
Q  3 ttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||| |||||||||||  |||||||||||||| ||| ||||||||| ||||||||||||    
T  23119079 ttttttgtttggtacttttagttggtggtcaaacccgttacaatgtctgggtattggct 23119021  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Complemental strand, 8934747 - 8934667
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 84  Q
    |||||| ||||||| |||  |||||||||||||| ||| ||| |||||||||||||||||| |    |||||||||||||||||    
T  8934747 tcttttttgtttggaacttttagttggtggtcaaacccgttataatgtttgggtattggctaac---ttggttttgttgttgta 8934667  T

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Target: chr4; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 33988263 - 33988343
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 84  Q
    |||||| ||||||| |||  || ||||||||||| ||| |||||||||||||||||||||| |    |||||||||||||||||    
T  33988263 tcttttttgtttggcacttttaattggtggtcaaacccgttacaatgtttgggtattggctaac---ttggttttgttgttgta 33988343  T

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Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Complemental strand, 19644616 - 19644576
Alignment:
Q  21 tagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  19644616 tagttggtggtcaaacccgttacaatgtttgggtattggct 19644576  T

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Target: chr5 (Bit Score: 89; Significance: 7e-43; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 4 - 179
Target Start/End: Original strand, 11575190 - 11575364
Alignment:
Q  4 tttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgtaatgacttgtacttttcggt 103  Q
    ||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||   | ||||||| | ||||||||| |||||| ||||||| |||    
T  11575190 tttatgtttggcactcatagttggtggtcaagccctttacaatgtttgggtattggc---ttagttggtgtcgttgttgtactgacttctactttttggt 11575286  T
Q  104 g--ttcttgatgagtctttaaggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgtt 179  Q
    |  || |||| |||| ||| |||||||| ||||||||||||| |||||||| |||||||||||||||||| |||||||    
T  11575287 gttttgttgacgagtatttgaggcacgctttgtgctaatgagactcttgttgttaatataattccattttcgattgtt 11575364  T

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Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 84
Target Start/End: Original strand, 22095760 - 22095825
Alignment:
Q  16 actaatagttggtggtcaagccctttacaatgtttgggtattggctgatgagttggttttgttgttgta 84  Q
    ||||||||||||||||||||||||||||||||| |||||||||||| ||   |||||||||||| ||||    
T  22095760 actaatagttggtggtcaagccctttacaatgtctgggtattggctaat---ttggttttgttggtgta 22095825  T

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Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 123 - 180
Target Start/End: Original strand, 22095895 - 22095952
Alignment:
Q  123 ggcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    ||||||||||||||||||||| |||| ||| || ||||||||||||||||||||||||    
T  22095895 ggcacgccttgtgctaatgagactctggttgtttatataattccatttttgattgttc 22095952  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 5415662 - 5415702
Alignment:
Q  21 tagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||||||||||| ||| ||||||||||||||||||||||    
T  5415662 tagttggtggtcaaacccgttacaatgtttgggtattggct 5415702  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 146 - 179
Target Start/End: Original strand, 5415730 - 5415763
Alignment:
Q  146 tcttgttattaatataattccatttttgattgtt 179  Q
    ||||||| ||||||||||||||||||||||||||    
T  5415730 tcttgttgttaatataattccatttttgattgtt 5415763  T

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Target: scaffold0108 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 124 - 180
Target Start/End: Complemental strand, 10449 - 10393
Alignment:
Q  124 gcacgccttgtgctaatgaggctcttgttattaatataattccatttttgattgttc 180  Q
    ||||| |||||||||||||| |||||||| |||||||||||||||||||||||||||    
T  10449 gcacgtcttgtgctaatgagactcttgttgttaatataattccatttttgattgttc 10393  T

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Target: scaffold0108; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 61
Target Start/End: Complemental strand, 10554 - 10494
Alignment:
Q  1 tcttttatgtttggtactaatagttggtggtcaagccctttacaatgtttgggtattggct 61  Q
    |||||| ||||||| |||  ||||||||||| || ||| ||||||||||||||||||||||    
T  10554 tcttttttgtttggcacttttagttggtggttaaacccgttacaatgtttgggtattggct 10494  T

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