View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2366_low_7 (Length: 269)

Name: NF2366_low_7
Description: NF2366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2366_low_7
NF2366_low_7
[»] chr3 (24 HSPs)
chr3 (90-250)||(7856529-7856689)
chr3 (86-247)||(36477954-36478117)
chr3 (87-251)||(38573005-38573169)
chr3 (86-251)||(24309905-24310070)
chr3 (87-251)||(26285734-26285898)
chr3 (86-238)||(23778302-23778451)
chr3 (90-251)||(36475496-36475657)
chr3 (16-75)||(7856587-7856646)
chr3 (86-251)||(25070630-25070795)
chr3 (86-251)||(36617696-36617861)
chr3 (86-251)||(26903179-26903344)
chr3 (16-75)||(26285780-26285839)
chr3 (21-71)||(38573068-38573118)
chr3 (182-251)||(52308859-52308928)
chr3 (16-75)||(23778348-23778407)
chr3 (32-75)||(24309964-24310007)
chr3 (89-140)||(52308806-52308857)
chr3 (16-74)||(25070677-25070735)
chr3 (16-74)||(26903239-26903297)
chr3 (16-74)||(36617743-36617801)
chr3 (42-73)||(25735261-25735292)
chr3 (42-72)||(25203050-25203080)
chr3 (41-75)||(36475555-36475589)
chr3 (20-72)||(4137233-4137285)
[»] chr1 (16 HSPs)
chr1 (84-233)||(34912362-34912506)
chr1 (86-251)||(8065009-8065174)
chr1 (86-251)||(9539525-9539690)
chr1 (86-238)||(10781080-10781234)
chr1 (86-238)||(27464170-27464322)
chr1 (86-250)||(1016924-1017088)
chr1 (86-169)||(25031056-25031139)
chr1 (16-75)||(27464217-27464276)
chr1 (86-156)||(9477749-9477819)
chr1 (16-75)||(8065068-8065127)
chr1 (19-75)||(10781130-10781188)
chr1 (16-74)||(1016971-1017029)
chr1 (16-75)||(34912402-34912457)
chr1 (203-251)||(10781246-10781294)
chr1 (126-238)||(14230059-14230171)
chr1 (90-234)||(23353434-23353578)
[»] chr7 (20 HSPs)
chr7 (86-246)||(30074540-30074700)
chr7 (86-251)||(24658452-24658616)
chr7 (86-249)||(1691678-1691841)
chr7 (89-251)||(38300289-38300455)
chr7 (86-239)||(33941549-33941701)
chr7 (86-251)||(43265853-43266018)
chr7 (89-246)||(2945310-2945467)
chr7 (20-75)||(30074591-30074646)
chr7 (16-75)||(33941595-33941654)
chr7 (28-71)||(24658514-24658557)
chr7 (84-251)||(39785527-39785694)
chr7 (16-74)||(43265900-43265958)
chr7 (19-71)||(1691739-1691791)
chr7 (20-74)||(39780968-39781022)
chr7 (159-248)||(27080448-27080536)
chr7 (159-248)||(27197765-27197853)
chr7 (23-75)||(25233035-25233087)
chr7 (121-193)||(26787364-26787436)
chr7 (202-246)||(32221863-32221907)
chr7 (23-75)||(40716879-40716931)
[»] chr2 (15 HSPs)
chr2 (88-251)||(32033003-32033166)
chr2 (90-246)||(3357008-3357161)
chr2 (86-251)||(7700368-7700536)
chr2 (86-251)||(4075471-4075636)
chr2 (89-251)||(18703573-18703735)
chr2 (149-251)||(34190055-34190157)
chr2 (90-234)||(34878555-34878699)
chr2 (32-75)||(18703633-18703676)
chr2 (16-75)||(32033062-32033121)
chr2 (32-71)||(34190118-34190157)
chr2 (16-74)||(4075531-4075589)
chr2 (13-75)||(34878595-34878657)
chr2 (19-75)||(7700427-7700482)
chr2 (16-72)||(41009696-41009752)
chr2 (30-69)||(3357063-3357102)
[»] chr5 (14 HSPs)
chr5 (89-237)||(43144606-43144754)
chr5 (86-250)||(36744967-36745133)
chr5 (149-250)||(7607236-7607337)
chr5 (87-251)||(25819106-25819271)
chr5 (86-233)||(34750989-34751136)
chr5 (16-75)||(43144651-43144710)
chr5 (86-233)||(5069892-5070045)
chr5 (16-75)||(36745025-36745086)
chr5 (27-71)||(7607231-7607275)
chr5 (28-75)||(26459778-26459825)
chr5 (16-66)||(25819176-25819226)
chr5 (16-74)||(17076578-17076636)
chr5 (149-251)||(29670003-29670105)
chr5 (19-75)||(5069933-5069989)
[»] chr8 (21 HSPs)
chr8 (89-237)||(29866207-29866356)
chr8 (89-251)||(44873314-44873476)
chr8 (86-238)||(10381463-10381615)
chr8 (86-251)||(45486114-45486279)
chr8 (86-232)||(32161305-32161451)
chr8 (86-250)||(6802672-6802836)
chr8 (87-251)||(7681276-7681440)
chr8 (84-251)||(24556814-24556981)
chr8 (86-155)||(2148506-2148575)
chr8 (86-138)||(11993623-11993675)
chr8 (16-75)||(29866252-29866312)
chr8 (31-75)||(32161367-32161411)
chr8 (98-250)||(43421639-43421790)
chr8 (16-75)||(6802719-6802778)
chr8 (16-75)||(10381509-10381568)
chr8 (32-75)||(29841142-29841185)
chr8 (86-133)||(34696936-34696983)
chr8 (16-74)||(45486161-45486219)
chr8 (148-250)||(7388102-7388204)
chr8 (30-75)||(7388101-7388146)
chr8 (16-65)||(12585727-12585776)
[»] chr4 (15 HSPs)
chr4 (84-251)||(2158659-2158826)
chr4 (86-247)||(4377312-4377475)
chr4 (86-247)||(36247904-36248066)
chr4 (86-247)||(33518106-33518269)
chr4 (91-238)||(1112041-1112188)
chr4 (112-251)||(2814018-2814157)
chr4 (87-239)||(25023145-25023296)
chr4 (16-75)||(1112087-1112146)
chr4 (16-75)||(2158718-2158777)
chr4 (21-75)||(25023196-25023250)
chr4 (203-251)||(4377265-4377313)
chr4 (203-251)||(36247857-36247905)
chr4 (16-75)||(36247958-36248019)
chr4 (16-57)||(4377387-4377428)
chr4 (203-251)||(33518058-33518107)
[»] chr6 (10 HSPs)
chr6 (86-239)||(14607675-14607827)
chr6 (86-251)||(21883286-21883451)
chr6 (86-251)||(24901710-24901875)
chr6 (86-251)||(18816941-18817106)
chr6 (123-251)||(6689234-6689364)
chr6 (16-74)||(18817001-18817059)
chr6 (16-74)||(24901770-24901828)
chr6 (90-167)||(30705401-30705478)
chr6 (122-162)||(30705100-30705140)
chr6 (197-250)||(33704144-33704198)
[»] scaffold0002 (1 HSPs)
scaffold0002 (86-251)||(461240-461404)
[»] scaffold0311 (2 HSPs)
scaffold0311 (138-251)||(807-920)
scaffold0311 (21-74)||(807-860)
[»] scaffold0684 (2 HSPs)
scaffold0684 (16-72)||(4196-4252)
scaffold0684 (86-189)||(4196-4299)
[»] scaffold0163 (2 HSPs)
scaffold0163 (16-72)||(3866-3922)
scaffold0163 (86-189)||(3819-3922)


Alignment Details
Target: chr3 (Bit Score: 97; Significance: 1e-47; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 90 - 250
Target Start/End: Complemental strand, 7856689 - 7856529
Alignment:
Q  90 tttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttctt 189  Q
    |||||||||||||||| |||| ||||||||| ||| |||||||||||||||||| || |||||||||| ||||||||||| |||||||| | ||||||||    
T  7856689 tttttcagctatgaaatttgtgaagagtaacctatataacaaaatgggtgatcagtggctaaatgactgtcttgtaacttatatagaaagagatgttctt 7856590  T
Q  190 ttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatttt 250  Q
    |||||  |||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||    
T  7856589 ttaacaattaacaatgacgtcattttagctcatttttaacaaatggataggagacgatttt 7856529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 247
Target Start/End: Original strand, 36477954 - 36478117
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaact--tgtatagaaataaat 183  Q
    |||||||||||| |||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||    | ||||||||  | |||||||| | ||    
T  36477954 gtgttttttcagatatgaaagttgtgaagagtaacctatgtaacaaaatggatgatcagtgactaaatgttcgttttgtaacttatatatagaaaaagat 36478053  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgat 247  Q
    |||||||||||  |||  ||||||||||||||||| |||||| || ||||||| ||||||||||    
T  36478054 gttcttttaacaattagtaatgatgtcattttagctcattttcaagaaatggacagaagacgat 36478117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 38573169 - 38573005
Alignment:
Q  87 tgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgtt 186  Q
    |||||||||||||| ||||||||| |||| ||| ||| |||||||||| | ||||||||| ||||||||   || |||||||| |||||||| | |||||    
T  38573169 tgttttttcagctacgaaagttgtgaagaataaattaagtaacaaaattgatgatcaatggctaaatgatcgtcgtgtaacttatatagaaagagatgtt 38573070  T
Q  187 cttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    || |||||  |||  |||| |||||||||||| |||||| ||||||||||||| |||||||||||    
T  38573069 ctattaacaattagcaatgctgtcattttagctcattttcaacaaatggataggagacgattttc 38573005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 24310070 - 24309905
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||| |||||||||||| ||||||||| ||||||| ||||||| |||||  ||  ||||||| | |||||||||||  ||||||| | ||||    
T  24310070 gtgttttttcagatatgaaagttgtgaagagtaacatatgtaataaaatggatgatcggtggttaaatgaatgtcttgtaacttacatagaaagagatgt 24309971  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||  |||| |||||||| |||||  |  ||||| ||||||||||||| |||||||||||    
T  24309970 tcttttaacaattaacaatgatgtgattttgacttattttcaacaaatggataggagacgattttc 24309905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 26285734 - 26285898
Alignment:
Q  87 tgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgtt 186  Q
    |||||||| || | |||||||||| |||||||||  ||||||||||||||||||| | || |||||||||| ||||||||| | | |||||| | |||||    
T  26285734 tgtttttttagatttgaaagttgtgaagagtaaccaatgtaacaaaatgggtgattagtggctaaatgactgtcttgtaacatatgtagaaagatatgtt 26285833  T
Q  187 cttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||||||||  |||  ||||||||| ||||| | |||||| ||||||||||||| | |||||||||    
T  26285834 cttttaacaattagcaatgatgtccttttaactcattttcaacaaatggataggaaacgattttc 26285898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 23778451 - 23778302
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||| ||||||||||||||| |||    || |||||||||||||||||||||| ||||||||| ||  | |||| |||| |||||||| | ||||    
T  23778451 gtgtttttttagctatgaaagttgtgaagt---acctatgtaacaaaatgggtgatcagtgactaaataaccgttttgttacttatatagaaagagatgt 23778355  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggata 238  Q
    |||||||||  |||  ||||||||||||||||| |||||| ||||||||||||    
T  23778354 tcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggata 23778302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 90 - 251
Target Start/End: Complemental strand, 36475657 - 36475496
Alignment:
Q  90 tttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttctt 189  Q
    ||||||||||||||||||| | ||||||||| |||||||||||||| ||||||| |   ||||  ||  ||||||||||| |||| ||| | ||||||||    
T  36475657 tttttcagctatgaaagttctaaagagtaacctatgtaacaaaatgagtgatcagttgataaacaaccgtcttgtaacttatataaaaagagatgttctt 36475558  T
Q  190 ttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||  |||  |||||||||||||| || ||||||||||||||| || | |||||||||||    
T  36475557 ttaacaattagcaatgatgtcattttcgctcatttttaacaaatgaatgggagacgattttc 36475496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 7856646 - 7856587
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  7856646 atgggtgatcagtggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 7856587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 25070630 - 25070795
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  25070630 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 25070729  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| ||||||||||| | |||||||||||    
T  25070730 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttc 25070795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 36617696 - 36617861
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  36617696 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 36617795  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| ||||||||||| | |||||||||||    
T  36617796 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttc 36617861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 26903344 - 26903179
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  26903344 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 26903245  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| |||||||||||   |||||||||||    
T  26903244 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatgacagacgattttc 26903179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 26285780 - 26285839
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||| | ||||||||||||||||||||||| ||| |||||||| |||||||||||    
T  26285780 atgggtgattagtggctaaatgactgtcttgtaacatatgtagaaagatatgttctttta 26285839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 71
Target Start/End: Complemental strand, 38573118 - 38573068
Alignment:
Q  21 tgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttct 71  Q
    ||||||||||||||||||  ||| |||||||||||||||||||||||||||    
T  38573118 tgatcaatggctaaatgatcgtcgtgtaacttatatagaaagagatgttct 38573068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 52308859 - 52308928
Alignment:
Q  182 atgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||||||| |||||  |||| ||||||||||||||||| |||||| ||||||||||||| ||| |||||||    
T  52308859 atgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggataggagatgattttc 52308928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 23778407 - 23778348
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||| || |||||| || || |||| |||||||||||||||||||||||||||    
T  23778407 atgggtgatcagtgactaaataaccgttttgttacttatatagaaagagatgttctttta 23778348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 24310007 - 24309964
Alignment:
Q  32 taaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||| |||||||||||||| |||||||||||||||||||||    
T  24310007 taaatgaatgtcttgtaacttacatagaaagagatgttctttta 24309964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 52308806 - 52308857
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtga 140  Q
    |||||||||||||||| ||||| ||||||||| ||| |||||||||||||||    
T  52308806 ttttttcagctatgaatgttgtgaagagtaacctatttaacaaaatgggtga 52308857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 25070677 - 25070735
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  25070677 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 25070735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 26903297 - 26903239
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  26903297 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 26903239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 36617743 - 36617801
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  36617743 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 36617801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 42 - 73
Target Start/End: Complemental strand, 25735292 - 25735261
Alignment:
Q  42 tcttgtaacttatatagaaagagatgttcttt 73  Q
    ||||||||||||||||||||||||||||||||    
T  25735292 tcttgtaacttatatagaaagagatgttcttt 25735261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 72
Target Start/End: Original strand, 25203050 - 25203080
Alignment:
Q  42 tcttgtaacttatatagaaagagatgttctt 72  Q
    |||||||||||||||||||||||||||||||    
T  25203050 tcttgtaacttatatagaaagagatgttctt 25203080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 75
Target Start/End: Complemental strand, 36475589 - 36475555
Alignment:
Q  41 gtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||||||||| |||||||||||||||||    
T  36475589 gtcttgtaacttatataaaaagagatgttctttta 36475555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 4137233 - 4137285
Alignment:
Q  20 gtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctt 72  Q
    ||||||||| | |||||||  |||||||||| ||||||| |||||||||||||    
T  4137233 gtgatcaatagttaaatgatcgtcttgtaacatatatagtaagagatgttctt 4137285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 84 - 233
Target Start/End: Complemental strand, 34912506 - 34912362
Alignment:
Q  84 atgtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaat 183  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||| |||    |||| |||||||||| ||    
T  34912506 atgtgttttttcagctatgaaagttgttaagagtaacctatgtaacaaaatgggtgatcaatggctaaacgactgtct----acttatatagaaatagat 34912411  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaat 233  Q
    |||||||||||| |||||||||||||||||||| ||||||||||||||||    
T  34912410 gttcttttaaccattaaaaatgatgtcatttta-cccatttttaacaaat 34912362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 8065174 - 8065009
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||| |||| ||||||||| ||||||| ||||||| |||||| ||  ||||||||  |||| |||||| |||| ||| | ||||    
T  8065174 gtgttttttcagctatgaaacttgtgaagagtaacctatgtaataaaatggatgatcattggttaaatgaccgtcttataacttatataaaaagagatgt 8065075  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||  |||  |||||||||||||| || |||| | ||| ||||||||| |||||||||||    
T  8065074 tcttttaacaattagcaatgatgtcattttcgctcattctcaaccaatggataggagacgattttc 8065009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 9539525 - 9539690
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||||| |||||||||||||||||||  | | ||||||| |||| ||| | |||     
T  9539525 gtgttttttcagctatgaaaattgtgaagagtaacctatgtaacaaaatggatgatcaatgactaaatgaccgtatcgtaacttatataaaaagatatga 9539624  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||  | |  |||||| | |||||||| |||||| ||||||||||||  ||| |||||||    
T  9539625 tcttttaacaataagcaatgatattattttagctcattttcaacaaatggataagagatgattttc 9539690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 10781080 - 10781234
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaact--tgtatagaaataaat 183  Q
    |||||||||||| |||||||||  | ||||||||| ||||||||||||| |||||||| || |||||||||  ||||||||||  | |||||||| | ||    
T  10781080 gtgttttttcagatatgaaagtgttgaagagtaacctatgtaacaaaataggtgatcagtggctaaatgaccgtcttgtaacttatatatagaaagatat 10781179  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggata 238  Q
    |||||||||||  |||  || ||| |||||||| | |||||| ||||||||||||    
T  10781180 gttcttttaacaattagcaacgatttcattttaactcattttcaacaaatggata 10781234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 238
Target Start/End: Original strand, 27464170 - 27464322
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||||||   |||| | |  ||| |||||||||||||||||| || |||||| ||  ||||||||||| |||||||| | || |    
T  27464170 gtgttttttcagctatgaaagtttggaagaatcaactatataacaaaatgggtgatcagtggctaaataaccgtcttgtaacttatatagaaaaagatat 27464269  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggata 238  Q
    |||||||||  |||| ||||| ||||||||||  |||||| ||||||| ||||    
T  27464270 tcttttaacaattaacaatgacgtcattttagttcattttcaacaaatagata 27464322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 1016924 - 1017088
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  1016924 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 1017023  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatttt 250  Q
    |||||| ||  |||  | |||||| ||| |||| |||| | ||||||||||| | ||||||||||    
T  1017024 tcttttcacaattagcactgatgttattctagctcattctcaacaaatggatggcagacgatttt 1017088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 169
Target Start/End: Complemental strand, 25031139 - 25031056
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaactt 169  Q
    |||||||||||  |||||||||||| |||| |||| |||||||||||||||||||| | ||||||||||||  |||||||||||    
T  25031139 gtgttttttcaaatatgaaagttgtgaagattaacctatgtaacaaaatgggtgataagtgactaaatgacggtcttgtaactt 25031056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 27464217 - 27464276
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||| ||||||||| || ||||||||||||||||||||| |||| ||||||||    
T  27464217 atgggtgatcagtggctaaataaccgtcttgtaacttatatagaaaaagatattctttta 27464276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 156
Target Start/End: Complemental strand, 9477819 - 9477749
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgac 156  Q
    ||||||||||||||||||||||||| ||||||||| |||| || ||||| |||||||| || | |||||||    
T  9477819 gtgttttttcagctatgaaagttgtgaagagtaacctatgcaataaaattggtgatcagtggcgaaatgac 9477749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 8065127 - 8065068
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||| |||||| ||| |||||||| ||||| ||||||||||| |||||||||||||||||    
T  8065127 atggatgatcattggttaaatgaccgtcttataacttatataaaaagagatgttctttta 8065068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 10781130 - 10781188
Alignment:
Q  19 ggtgatcaatggctaaatgactgtcttgtaact--tatatagaaagagatgttctttta 75  Q
    |||||||| |||||||||||| |||||||||||  |||||||||||| |||||||||||    
T  10781130 ggtgatcagtggctaaatgaccgtcttgtaacttatatatagaaagatatgttctttta 10781188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 1016971 - 1017029
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  1016971 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 1017029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 34912457 - 34912402
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||||||||||||||| ||||||||    ||||||||||||| |||||||||||||    
T  34912457 atgggtgatcaatggctaaacgactgtct----acttatatagaaatagatgttctttta 34912402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Original strand, 10781246 - 10781294
Alignment:
Q  203 atgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||||||||| |||||| ||||||| |||| ||||||||||||    
T  10781246 atgatgtcattttagcacattttcaacaaatagatataagacgattttc 10781294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 126 - 238
Target Start/End: Original strand, 14230059 - 14230171
Alignment:
Q  126 taacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttt 225  Q
    ||||||||||   ||||||||| |||||||  |||||||||  | |||||||| ||||||||||  ||| ||||  ||| || | |||||||| ||||||    
T  14230059 taacaaaatgtaggatcaatgattaaatgatcatcttgtaagatatatagaaagaaatgttcttaaaacagttagtaataatataattttagctcatttt 14230158  T
Q  226 taacaaatggata 238  Q
     ||||||||||||    
T  14230159 caacaaatggata 14230171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 90 - 234
Target Start/End: Complemental strand, 23353578 - 23353434
Alignment:
Q  90 tttttcagctatgaaagttgttaagagt-aacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttct 188  Q
    ||||| ||||||||||||||| || ||| |||||  ||||||||||| ||| |   ||||||||| | ||||||  ||||| |||||||| |||||||||    
T  23353578 ttttttagctatgaaagttgtgaatagtcaacttc-gtaacaaaatgagtgttgtgtgactaaataattatcttaaaacttatatagaaagaaatgttct 23353480  T
Q  189 tttaaccgttaaaaatgatgtcattttagcccatttttaacaaatg 234  Q
    |||||   |||  ||| |||| |||||| | |||||| ||||||||    
T  23353479 tttaatatttagcaattatgttattttaactcattttcaacaaatg 23353434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 93; Significance: 2e-45; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 86 - 246
Target Start/End: Original strand, 30074540 - 30074700
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||| |||||||| | ||||    
T  30074540 gtgttttttcagatatgaaagttgtgaagagtaacctatgtaacaaaatgagtgatcaatggctaaatgaccatcttgtaacttatatagaaagagatgt 30074639  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacga 246  Q
    |||||||||  |||| ||||||||||||||| |  ||||| ||||||||||||| ||||||    
T  30074640 tcttttaacaattaacaatgatgtcattttaacttattttcaacaaatggataggagacga 30074700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 24658616 - 24658452
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| ||||||||| ||||||||||||||| |||||  || |||||||||  ||||||||||| |||||||| | ||||    
T  24658616 gtgttttttcagctatgaagattgtaaagagtaacctatgtaacaaaatggatgatcggtggctaaatgaccgtcttgtaacttatatagaaagagatgt 24658517  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||| |||| | |||  ||||||||||||||| | |||||| ||||||||||||| | |||||||||    
T  24658516 tctattaa-cattagcaatgatgtcattttaactcattttcaacaaatggataggaaacgattttc 24658452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 249
Target Start/End: Complemental strand, 1691841 - 1691678
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||| |||||||| ||||||||| ||||||||||||| |||||||| ||  |||| | || ||||||||||| |||| ||| | ||||    
T  1691841 gtgttttttcagctataaaagttgtgaagagtaacatatgtaacaaaattggtgatcagtggataaacggctgtcttgtaacttatatataaagagatgt 1691742  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattt 249  Q
    ||| |||||  |||| |||||| |||||||| | |||||| ||||||||||||| ||| |||||    
T  1691741 tctattaacaattaacaatgatatcattttaactcattttcaacaaatggataggagatgattt 1691678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 38300289 - 38300455
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttg----tatagaaataaatg 184  Q
    |||||||| ||||||||||||| |||||||| ||| |||||||||||| |||||| || |||||||||  |||||||||||     |||||||||| |||    
T  38300289 ttttttcatctatgaaagttgtaaagagtaaattaagtaacaaaatggatgatcagtggctaaatgaccgtcttgtaacttacttatatagaaatagatg 38300388  T
Q  185 ttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    || | |||||  |||  |||| |||||||||||| |||||| ||||||||||||| |||||||||||    
T  38300389 ttttattaacaattatcaatgctgtcattttagctcattttcaacaaatggataggagacgattttc 38300455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 33941549 - 33941701
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||| ||||||||||||| ||||||| | ||||||| ||| ||||| |||| || |||||||||  ||||||||||| |||||||| ||||||    
T  33941549 gtgttttttcatctatgaaagttgtgaagagtagcctatgtaataaa-tgggtaatcagtggctaaatgaccgtcttgtaacttatatagaaagaaatgt 33941647  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatag 239  Q
    |||||||||  |||  |||||||| |||||| | |||||| ||||||| |||||    
T  33941648 tcttttaacaattagcaatgatgttattttaactcattttcaacaaattgatag 33941701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 43265853 - 43266018
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| |||||||| | ||||    
T  43265853 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttatagaaagagatgt 43265952  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| ||||||||||| | ||| |||||||    
T  43265953 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagatgattttc 43266018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 89 - 246
Target Start/End: Original strand, 2945310 - 2945467
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttct 188  Q
    ||||||||| |||||||||||| ||||||||| ||  ||||||||||| |||||| ||  |||||||   ||||||| ||| ||||||||   || ||||    
T  2945310 ttttttcagatatgaaagttgtgaagagtaacctacataacaaaatggatgatcagtggttaaatgatcgtcttgtagcttatatagaaagtgattttct 2945409  T
Q  189 tttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacga 246  Q
    ||||||  |||  ||||||||||||||||  |||||| ||||||| ||||| ||||||    
T  2945410 tttaacaattagcaatgatgtcattttaggtcattttcaacaaatagataggagacga 2945467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 30074591 - 30074646
Alignment:
Q  20 gtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||||||||||||  ||||||||||||||||||||||||||||||||||    
T  30074591 gtgatcaatggctaaatgaccatcttgtaacttatatagaaagagatgttctttta 30074646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 33941595 - 33941654
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||| |||| |||||||||||| ||||||||||||||||||||||| |||||||||||    
T  33941595 atgggtaatcagtggctaaatgaccgtcttgtaacttatatagaaagaaatgttctttta 33941654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 28 - 71
Target Start/End: Complemental strand, 24658557 - 24658514
Alignment:
Q  28 tggctaaatgactgtcttgtaacttatatagaaagagatgttct 71  Q
    |||||||||||| |||||||||||||||||||||||||||||||    
T  24658557 tggctaaatgaccgtcttgtaacttatatagaaagagatgttct 24658514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 39785694 - 39785527
Alignment:
Q  84 atgtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaat 183  Q
    |||||||||||||||||| || ||||| |||||| |  ||||||||| ||||  ||| |  ||  |||| |||  ||||||||||| ||| ||||         
T  39785694 atgtgttttttcagctatcaaggttgtgaagagtcaactatgtaacacaatgaatgaccggtggttaaacgaccgtcttgtaacttttatcgaaaggggc 39785595  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||||  |||  |||| ||| |||||||| |||||||||||||||||||| |||||||||||    
T  39785594 gttcttttaacaattatcaatgttgttattttagctcatttttaacaaatggatagtagacgattttc 39785527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 43265900 - 43265958
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| |||||||||||||||||||||    
T  43265900 atgggtgatcaatggttaaatgatcggcttgtaacttttatagaaagagatgttctttt 43265958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 71
Target Start/End: Complemental strand, 1691791 - 1691739
Alignment:
Q  19 ggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttct 71  Q
    |||||||| ||| |||| | ||||||||||||||||||| |||||||||||||    
T  1691791 ggtgatcagtggataaacggctgtcttgtaacttatatataaagagatgttct 1691739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 74
Target Start/End: Original strand, 39780968 - 39781022
Alignment:
Q  20 gtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  39780968 gtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 39781022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 248
Target Start/End: Complemental strand, 27080536 - 27080448
Alignment:
Q  159 tcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatt 248  Q
    ||||||||||| |||| ||| | |||||||||||||  || |  |||||||||||||||| |||||| |||||||  |||| ||||||||    
T  27080536 tcttgtaacttatataaaaagatatgttcttttaacaatt-agcatgatgtcattttagctcattttcaacaaataaataggagacgatt 27080448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 159 - 248
Target Start/End: Original strand, 27197765 - 27197853
Alignment:
Q  159 tcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatt 248  Q
    ||||||||||| |||| ||| | |||||||||||||  || |  |||||||||||||||| |||||| |||||||  |||| ||||||||    
T  27197765 tcttgtaacttatataaaaagatatgttcttttaacaatt-agcatgatgtcattttagctcattttcaacaaataaataggagacgatt 27197853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Complemental strand, 25233087 - 25233035
Alignment:
Q  23 atcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||| |||||||||||  ||||||||| ||||||| ||||| |||||||||||    
T  25233087 atcagtggctaaatgatcgtcttgtaatttatataaaaagaaatgttctttta 25233035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 121 - 193
Target Start/End: Complemental strand, 26787436 - 26787364
Alignment:
Q  121 ttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttcttttaa 193  Q
    ||||||||||||||  ||||||| || ||| |||||||| | ||||||| |||||||  |||| |||||||||    
T  26787436 ttatgtaacaaaataagtgatcagtggctacatgactatatagtaacttatatagaatgaaatattcttttaa 26787364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 202 - 246
Target Start/End: Original strand, 32221863 - 32221907
Alignment:
Q  202 aatgatgtcattttagcccatttttaacaaatggatagaagacga 246  Q
    ||||||||||||||| | |||||| ||||||||||||| ||||||    
T  32221863 aatgatgtcattttaactcattttcaacaaatggataggagacga 32221907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 23 - 75
Target Start/End: Original strand, 40716879 - 40716931
Alignment:
Q  23 atcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||| |||||||||||| || |||||| ||||| ||||||| |||||||||||    
T  40716879 atcagtggctaaatgacagttttgtaatttatacagaaagaaatgttctttta 40716931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 88; Significance: 2e-42; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 251
Target Start/End: Complemental strand, 32033166 - 32033003
Alignment:
Q  88 gttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttc 187  Q
    ||||||| ||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||| |||| |||||||||||| |||||||| | ||||||    
T  32033166 gtttttttagctatgaaagttgtgaagagtaacctatgtaacaaaatggatgatcactgactaattgaccatcttgtaacttatatagaaagagatgttc 32033067  T
Q  188 ttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||  |||  | ||||||||||||| | ||||||||||||||||||||  ||||||||||    
T  32033066 ttttaacaattagtactgatgtcattttaactcatttttaacaaatggataggcgacgattttc 32033003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 90 - 246
Target Start/End: Original strand, 3357008 - 3357161
Alignment:
Q  90 tttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttctt 189  Q
    |||||||||||| |||||||| ||||||||  ||||||||||||||| |||| | || |||||| ||  ||||||||||| |||||||| | ||||| ||    
T  3357008 tttttcagctataaaagttgtgaagagtaaactatgtaacaaaatggatgat-agtg-ctaaatcaccgtcttgtaacttatatagaaagagatgtt-tt 3357104  T
Q  190 ttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacga 246  Q
    |||||  |||  ||||||||||||||| | |||||| ||||||||||||| ||||||    
T  3357105 ttaacaattagcaatgatgtcattttatctcattttcaacaaatggataggagacga 3357161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 7700536 - 7700368
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagt-aact---tatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataa 181  Q
    ||||||||||||||||||||||| | || ||| ||||   ||||||||||||| |||||||  || ||| |||| | ||||||||||| |||||||| ||    
T  7700536 gtgttttttcagctatgaaagttatgaaaagtcaactatatatgtaacaaaataggtgatctgtggctagatgattgtcttgtaacttatatagaaagaa 7700437  T
Q  182 atgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
     ||||||||||||  |||  ||||||||||||||||| |||||| |||| ||| |||  ||| |||||||    
T  7700436 -tgttcttttaacaattagcaatgatgtcattttagctcattttcaacatatgaatatgagatgattttc 7700368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 4075636 - 4075471
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| |||| |||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  4075636 gtgttttttcagctatgaagattgtgaagagtcatttacgtaataaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 4075537  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| ||||||| ||| | |||||||||||    
T  4075536 tcttttcacaattagtactgatgttattctagctcattttcaacaaattgatggcagacgattttc 4075471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 89 - 251
Target Start/End: Original strand, 18703573 - 18703735
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttct 188  Q
    |||||||| ||||||||||||| |||| | | || ||||||| |||  ||||| | ||  ||||||||  ||||||||||| | |||||| | |||||||    
T  18703573 ttttttcaactatgaaagttgtgaagaatcaattgtgtaacacaattagtgattagtggataaatgaccgtcttgtaacttatttagaaagagatgttct 18703672  T
Q  189 tttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||||||  |||  |||| | | ||||| || |||||||||||||||||||| |||| ||||||    
T  18703673 tttaacaattagcaatgtttttatttttgctcatttttaacaaatggataggagacaattttc 18703735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 34190157 - 34190055
Alignment:
Q  149 taaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatt 248  Q
    ||||||| | ||||||||||| |||||||| | ||||||| |||||  |||  |||||| |||||||||  |||||| ||||||||||||| ||||||||    
T  34190157 taaatgaatgtcttgtaacttatatagaaagagatgttctattaacaattagcaatgatatcattttagttcattttcaacaaatggataggagacgatt 34190058  T
Q  249 ttc 251  Q
    |||    
T  34190057 ttc 34190055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 90 - 234
Target Start/End: Original strand, 34878555 - 34878699
Alignment:
Q  90 tttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttctt 189  Q
    |||||||  ||| |||||||| |||||| |  ||||||| || ||| ||||| ||||  |||||||   ||||||||||| |||||||||| ||||||||    
T  34878555 tttttcaattataaaagttgtgaagagtcaactatgtaataatatgagtgattaatggttaaatgatcgtcttgtaacttatatagaaatatatgttctt 34878654  T
Q  190 ttaaccgttaaaaatgatgtcattttagcccatttttaacaaatg 234  Q
    |||||  |||| ||||| ||| ||||| | |||||| ||||||||    
T  34878655 ttaacaattaacaatgacgtctttttaactcattttcaacaaatg 34878699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 18703633 - 18703676
Alignment:
Q  32 taaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||| |||||||||||||| ||||||||||||||||||||    
T  18703633 taaatgaccgtcttgtaacttatttagaaagagatgttctttta 18703676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 32033121 - 32033062
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||| |||||| || |||| ||||  ||||||||||||||||||||||||||||||||||    
T  32033121 atggatgatcactgactaattgaccatcttgtaacttatatagaaagagatgttctttta 32033062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 71
Target Start/End: Complemental strand, 34190157 - 34190118
Alignment:
Q  32 taaatgactgtcttgtaacttatatagaaagagatgttct 71  Q
    ||||||| ||||||||||||||||||||||||||||||||    
T  34190157 taaatgaatgtcttgtaacttatatagaaagagatgttct 34190118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 4075589 - 4075531
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  4075589 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 4075531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 13 - 75
Target Start/End: Original strand, 34878595 - 34878657
Alignment:
Q  13 aatatgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||| ||||| ||||| |||||||  ||||||||||||||||||||| | |||||||||||    
T  34878595 aatatgagtgattaatggttaaatgatcgtcttgtaacttatatagaaatatatgttctttta 34878657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 7700482 - 7700427
Alignment:
Q  19 ggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||  |||||| |||| |||||||||||||||||||||||| |||||||||||    
T  7700482 ggtgatctgtggctagatgattgtcttgtaacttatatagaaaga-atgttctttta 7700427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 41009696 - 41009752
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctt 72  Q
    ||||||||||||||| |||||||  ||||| |||  |||||||||||||||||||||    
T  41009696 atgggtgatcaatggttaaatgatcgtcttataatgtatatagaaagagatgttctt 41009752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 30 - 69
Target Start/End: Original strand, 3357063 - 3357102
Alignment:
Q  30 gctaaatgactgtcttgtaacttatatagaaagagatgtt 69  Q
    ||||||| || |||||||||||||||||||||||||||||    
T  3357063 gctaaatcaccgtcttgtaacttatatagaaagagatgtt 3357102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 43144754 - 43144606
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttct 188  Q
    |||||||||||||||||| ||| ||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||| | |||||||| | |||||||    
T  43144754 ttttttcagctatgaaaggtgtaaagagtaacctatgtaacaaaatgggtgaccaatgactaaatgactgtcttgtaacatatatagaaaaagatgttct 43144655  T
Q  189 tttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggat 237  Q
    ||||||  |||| || ||||||| |||||| |||||| |||||||||||    
T  43144654 tttaacaattaacaaagatgtcactttagctcattttcaacaaatggat 43144606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 250
Target Start/End: Complemental strand, 36745133 - 36744967
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaact--tgtatagaaataaat 183  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||  || |||||||||  ||||||||||  | |||||||| | ||    
T  36745133 gtgttttttcagatatgaaagttgtgaagagtaacatatgtaacaaaatgggtgatcggtggctaaatgaccgtcttgtaacttatatatagaaagagat 36745034  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatttt 250  Q
    |||||||||||  |||  ||||||||||||||||| |||||| |||||||||||| |||||||||||    
T  36745033 gttcttttaacaattagcaatgatgtcattttagctcattttcaacaaatggatataagacgatttt 36744967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 149 - 250
Target Start/End: Original strand, 7607236 - 7607337
Alignment:
Q  149 taaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatt 248  Q
    ||||||| | ||||||||||| |||||||| | ||||||| |||||  |||| ||||||||||||||||| |||||| ||||||||||||||||||||||    
T  7607236 taaatgagtgtcttgtaacttatatagaaagagatgttctattaacaattaacaatgatgtcattttagctcattttcaacaaatggatagaagacgatt 7607335  T
Q  249 tt 250  Q
    ||    
T  7607336 tt 7607337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 87 - 251
Target Start/End: Complemental strand, 25819271 - 25819106
Alignment:
Q  87 tgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaat--aaatg 184  Q
    |||||||||| |||| |||||||| || |||| || ||||||| ||||||| |||||||| |||||||||  ||||||||||| | |||||||  | |||    
T  25819271 tgttttttcaactattaaagttgtgaatagtagct-atgtaaccaaatgggagatcaatggctaaatgaccgtcttgtaacttatgtagaaatagatatg 25819173  T
Q  185 ttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||| ||||  ||| | || ||||||||  ||||| ||||||||||||| |||| ||||||    
T  25819172 ttcttttaactgttagtaataaagttattttagcttattttcaacaaatggataggagacaattttc 25819106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 233
Target Start/End: Original strand, 34750989 - 34751136
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||| ||| |||||||||||||||| |||||||||  |||||||||||||| |||||  || |||||| ||  | ||||||||| |||| ||| | ||||    
T  34750989 gtgtctttacagctatgaaagttgtgaagagtaacccatgtaacaaaatggatgatcggtggctaaataaccgttttgtaacttatatataaagagatgt 34751088  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaat 233  Q
      |||||||  |||  ||||||||||||||||| |||||| |||||||    
T  34751089 aattttaacaattagcaatgatgtcattttagctcattttcaacaaat 34751136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 43144710 - 43144651
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||| ||||| |||||||||||||||||||| |||||||||| |||||||||||||    
T  43144710 atgggtgaccaatgactaaatgactgtcttgtaacatatatagaaaaagatgttctttta 43144651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 86 - 233
Target Start/End: Complemental strand, 5070045 - 5069892
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaact------tatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaat 179  Q
    |||||||||||||||||||||||| ||||||||| |      ||||||||||||| |||||| | || ||||| |||| | ||||||| | |||| |||     
T  5070045 gtgttttttcagctatgaaagttgataagagtaagtgtaacctatgtaacaaaattggtgattagtggctaaacgactgttttgtaacctatatataaag 5069946  T
Q  180 aaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaat 233  Q
    | ||||| |||||||  |||| |||||| |||||||| | |||||| |||||||    
T  5069945 agatgttattttaacaattaacaatgatatcattttaactcattttcaacaaat 5069892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 36745086 - 36745025
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaactta--tatagaaagagatgttctttta 75  Q
    ||||||||||  |||||||||||| |||||||||||||  ||||||||||||||||||||||    
T  36745086 atgggtgatcggtggctaaatgaccgtcttgtaacttatatatagaaagagatgttctttta 36745025  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 27 - 71
Target Start/End: Original strand, 7607231 - 7607275
Alignment:
Q  27 atggctaaatgactgtcttgtaacttatatagaaagagatgttct 71  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||    
T  7607231 atggttaaatgagtgtcttgtaacttatatagaaagagatgttct 7607275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 75
Target Start/End: Complemental strand, 26459825 - 26459778
Alignment:
Q  28 tggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||    
T  26459825 tggctaaatgactgtcttgtaacttatatataaagagatattccttta 26459778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 66
Target Start/End: Complemental strand, 25819226 - 25819176
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagat 66  Q
    ||||| |||||||||||||||||| |||||||||||||| |||||| ||||    
T  25819226 atgggagatcaatggctaaatgaccgtcttgtaacttatgtagaaatagat 25819176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 17076578 - 17076636
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||| ||||||||| |||||||  | |||||||||||||| |||||||||||| ||||    
T  17076578 atgggcgatcaatggttaaatgatcgacttgtaacttatattgaaagagatgttttttt 17076636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 251
Target Start/End: Complemental strand, 29670105 - 29670003
Alignment:
Q  149 taaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatt 248  Q
    |||||||  ||||| |||||| |||||||| | |||||||||||||  |||  ||| |||| ||||||||  ||||| ||||||||  |||||||| |||    
T  29670105 taaatgatcatcttctaacttatatagaaaaagatgttcttttaacaattatcaataatgttattttagcttattttcaacaaatgattagaagacaatt 29670006  T
Q  249 ttc 251  Q
    |||    
T  29670005 ttc 29670003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 5069989 - 5069933
Alignment:
Q  19 ggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||| | |||||||| |||||| ||||||| |||||| ||||||||||| |||||    
T  5069989 ggtgattagtggctaaacgactgttttgtaacctatatataaagagatgttatttta 5069933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 82; Significance: 9e-39; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 29866356 - 29866207
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataa-atgttc 187  Q
    |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||| |||||||||  ||||||||| | || ||||| || ||||||    
T  29866356 ttttttcagctatgaaagttgtgaagagtaacctatgtaacaaaatgggtgatcaatggctaaatgaccgtcttgtaacatatacagaaaaaagatgttc 29866257  T
Q  188 ttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggat 237  Q
    ||||||   |||| ||||||||||||||||| |||||| |||||||||||    
T  29866256 ttttaaaaattaataatgatgtcattttagctcattttcaacaaatggat 29866207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 89 - 251
Target Start/End: Complemental strand, 44873476 - 44873314
Alignment:
Q  89 ttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttct 188  Q
    ||||||||| |||||||||||| ||||||||| |||||||||||||||||||| | ||  ||||| || ||||||||||||| ||||||| | |||||||    
T  44873476 ttttttcagatatgaaagttgtgaagagtaacctatgtaacaaaatgggtgattagtggttaaataaccatcttgtaacttgcatagaaaaagatgttct 44873377  T
Q  189 tttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||||||  |||  ||| |||| |||||| | |||||| |||||||||||||||||||||||||    
T  44873376 tttaacaattagcaatcatgttattttaactcattttcaacaaatggatagaagacgattttc 44873314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 86 - 238
Target Start/End: Complemental strand, 10381615 - 10381463
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| || ||||| |||| | ||||||||| |||| ||| | ||||    
T  10381615 gtgttttttcagctatgaaagttgtgaagagtaacttatgtaataaaatgggtgatcagtggctaaacgactgttttgtaacttatatataaacagatgt 10381516  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggata 238  Q
    | |||||||  |||| ||||||||||||||||  |||||| ||||||| ||||    
T  10381515 tattttaacaattaacaatgatgtcattttagttcattttcaacaaatagata 10381463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 45486114 - 45486279
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  45486114 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 45486213  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| ||||||||||| | |||||||||||    
T  45486214 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttc 45486279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 86 - 232
Target Start/End: Original strand, 32161305 - 32161451
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||| |||||||| |||| |||||     ||||||||||||||||| || | ||||||||||||| |||||||||||||||| ||| | ||||    
T  32161305 gtgttttttcaactatgaaaattgtgaagagcccactatgtaacaaaatgggttattagtgactaaatgactgtcttgtaacttgtataaaaagagatgt 32161404  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaa 232  Q
    |||||||||  |||  | |||||| |||||| | |||||| ||||||    
T  32161405 tcttttaacatttagtattgatgttattttatctcattttcaacaaa 32161451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 250
Target Start/End: Original strand, 6802672 - 6802836
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||| ||||||||||||| ||||||    ||| |||||||||||||||||  || ||||||| |  ||||||||||| |||| ||| | ||||    
T  6802672 gtgttttttcaactatgaaagttgtgaagagtccactatataacaaaatgggtgatcggtggctaaatgtccgtcttgtaacttatataaaaagagatgt 6802771  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatttt 250  Q
    | |||||||  |||  ||||| |||||||||   ||||||||||||||| |||| |||| |||||    
T  6802772 tattttaacaattagcaatgaagtcattttacttcatttttaacaaatgaataggagacaatttt 6802836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 251
Target Start/End: Original strand, 7681276 - 7681440
Alignment:
Q  87 tgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgtt 186  Q
    ||||||||| ||||| |||||||| |||||| |  ||||||||||||| | |||| | |  ||||||     |||| |||||| |||||||| | |||||    
T  7681276 tgttttttctgctataaaagttgtgaagagtcaactatgtaacaaaatagatgattagtagctaaatattcgtcttataacttatatagaaagatatgtt 7681375  T
Q  187 cttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||||||||  |||  ||||||||||||||||  |||||| ||||||||||||| | |||||||||    
T  7681376 cttttaacaattagcaatgatgtcattttagaacattttcaacaaatggataggaaacgattttc 7681440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 84 - 251
Target Start/End: Original strand, 24556814 - 24556981
Alignment:
Q  84 atgtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaat 183  Q
    ||||||||||||| ||||||||||||| |||||  |  ||||||||||||||| ||||   || |||||||||  ||||||||||| |||| ||| || |    
T  24556814 atgtgttttttcaactatgaaagttgtgaagagacaactatgtaacaaaatggatgattggtggctaaatgaccgtcttgtaacttatatataaaaaagt 24556913  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
     ||||||||||  |||  ||| ||| || ||||   |||||| |||||||||||||||  ||||||||    
T  24556914 tttcttttaacaattagcaataatgacaatttacttcattttcaacaaatggatagaaatcgattttc 24556981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 86 - 155
Target Start/End: Complemental strand, 2148575 - 2148506
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatga 155  Q
    ||||||||||||||||||| |||||||||||| | ||||||||||||| || |||||  || ||||||||    
T  2148575 gtgttttttcagctatgaaggttgttaagagtcaattatgtaacaaaagggatgatctgtggctaaatga 2148506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 86 - 138
Target Start/End: Original strand, 11993623 - 11993675
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggt 138  Q
    ||||||||||||||||||| ||||| ||||||||| ||||||| |||||||||    
T  11993623 gtgttttttcagctatgaatgttgtgaagagtaacctatgtaataaaatgggt 11993675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 29866312 - 29866252
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatag-aaagagatgttctttta 75  Q
    |||||||||||||||||||||||| |||||||||| |||| || ||| |||||||||||||    
T  29866312 atgggtgatcaatggctaaatgaccgtcttgtaacatatacagaaaaaagatgttctttta 29866252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 32161367 - 32161411
Alignment:
Q  31 ctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||||||||||||||||| |||| |||||||||||||||||    
T  32161367 ctaaatgactgtcttgtaacttgtataaaaagagatgttctttta 32161411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 250
Target Start/End: Complemental strand, 43421790 - 43421639
Alignment:
Q  98 ctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgt 197  Q
    ||||||||||||| || ||| | ||||||||||||||  ||||||| |  || ||||||  ||||||||||| |||| |||  ||| ||||||||||  |    
T  43421790 ctatgaaagttgtgaaaagtcaattatgtaacaaaataagtgatcagttgctgaatgaccgtcttgtaacttatataaaaagtaatattcttttaacaat 43421691  T
Q  198 taaaaatgatgtcattttagcccatttttaacaaatggatagaagacgatttt 250  Q
     |  |||  |||||||||||  || ||||||||||||||||| ||||||||||    
T  43421690 cagtaatattgtcattttagttca-ttttaacaaatggataggagacgatttt 43421639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Original strand, 6802719 - 6802778
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||  |||||||||| | ||||||||||||||||| ||||||||||| |||||    
T  6802719 atgggtgatcggtggctaaatgtccgtcttgtaacttatataaaaagagatgttatttta 6802778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 10381568 - 10381509
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||||||| |||||||| |||||| |||||||||||||| ||| ||||||| |||||    
T  10381568 atgggtgatcagtggctaaacgactgttttgtaacttatatataaacagatgttatttta 10381509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 29841142 - 29841185
Alignment:
Q  32 taaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    ||||||| |||||||||||||||||||||||| |||||||||||    
T  29841142 taaatgagtgtcttgtaacttatatagaaagatatgttctttta 29841185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 133
Target Start/End: Original strand, 34696936 - 34696983
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaa 133  Q
    |||||||||||||||||||| |||| ||||||||| ||||||||||||    
T  34696936 gtgttttttcagctatgaaaattgtgaagagtaacctatgtaacaaaa 34696983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 45486161 - 45486219
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  45486161 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 45486219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 148 - 250
Target Start/End: Original strand, 7388102 - 7388204
Alignment:
Q  148 ctaaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgat 247  Q
    |||||||||  ||||||||||| |||||||||||||||| ||||||   |||  |||| | | |||||||| | |||| ||||| |||| ||||||| ||    
T  7388102 ctaaatgaccgtcttgtaacttatatagaaataaatgtttttttaaaaattagcaatgtttttattttagcacgttttcaacaattggaaagaagacaat 7388201  T
Q  248 ttt 250  Q
    |||    
T  7388202 ttt 7388204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 30 - 75
Target Start/End: Original strand, 7388101 - 7388146
Alignment:
Q  30 gctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||||| ||||||||||||||||||||| | ||||| |||||    
T  7388101 gctaaatgaccgtcttgtaacttatatagaaataaatgttttttta 7388146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 65
Target Start/End: Complemental strand, 12585776 - 12585727
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagaga 65  Q
    ||||||||||||||| ||||||| ||||| || ||||||||||| |||||    
T  12585776 atgggtgatcaatggttaaatgattgtctagttacttatatagagagaga 12585727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 84 - 251
Target Start/End: Complemental strand, 2158826 - 2158659
Alignment:
Q  84 atgtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaat 183  Q
    ||||||||||||| ||||||||||||| ||||||||| ||||||||||||||||||||  ||| |||||||||  ||||||||| | |||||||| | ||    
T  2158826 atgtgttttttcaactatgaaagttgtgaagagtaacctatgtaacaaaatgggtgattgatggctaaatgaccgtcttgtaacctatatagaaagagat 2158727  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
     ||||||||||  |||  |||||| | |||||||| |||||| ||||||||||||| |||||||||||    
T  2158726 cttcttttaacaattagcaatgatattattttagctcattttcaacaaatggataggagacgattttc 2158659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 4377475 - 4377312
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaact--tgtatagaaataa-a 182  Q
    |||||||||||| |||||||||||| ||||||||| |||||||||||||||||||||| || ||||||||   ||||||||||  | |||||||| || |    
T  4377475 gtgttttttcagatatgaaagttgtgaagagtaacctatgtaacaaaatgggtgatcagtggctaaatgatcgtcttgtaacttatatatagaaaaaaga 4377376  T
Q  183 tgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgat 247  Q
    |||||||| |||  |||  ||||||||||||||||| |||||| | | |||||||||||||||||    
T  4377375 tgttctttaaacaattagcaatgatgtcattttagctcattttcatc-aatggatagaagacgat 4377312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 36248066 - 36247904
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaactt--gtatagaaataaat 183  Q
    |||||||||||| |||||||| ||| ||||||||| ||| ||||||||||| |||||| || |||||||||  | |||||||||   |||||||| | ||    
T  36248066 gtgttttttcagatatgaaaggtgtgaagagtaacctatttaacaaaatggatgatcagtggctaaatgaccgttttgtaacttacatatagaaagatat 36247967  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgat 247  Q
    |||||||||||  |||| ||||||||||||||||| || ||| |||||||||||| ||||||||    
T  36247966 gttcttttaacaattaacaatgatgtcattttagctca-tttcaacaaatggataaaagacgat 36247904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 247
Target Start/End: Complemental strand, 33518269 - 33518106
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtata--gaaataaat 183  Q
    |||||||||| | |||||||||||| ||||||||| |||||||||||||| |  || | || |||| |||   ||||||||||| ||||  |||||| ||    
T  33518269 gtgttttttcggatatgaaagttgtgaagagtaacctatgtaacaaaatgagcaataagtggctaagtgatcgtcttgtaacttatatatagaaatagat 33518170  T
Q  184 gttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgat 247  Q
    |||||||||||  |||  ||||||||||||||||| |||||| |||| ||||||||||||||||    
T  33518169 gttcttttaacaattagcaatgatgtcattttagctcattttcaacagatggatagaagacgat 33518106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 91 - 238
Target Start/End: Complemental strand, 1112188 - 1112041
Alignment:
Q  91 ttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttcttt 190  Q
    |||||| ||||||||||||| |||||  |  ||||||||||||||| |||||||||  ||||||| | ||||||||||| |||||||||| |||||||||    
T  1112188 ttttcaactatgaaagttgtgaagagccaactatgtaacaaaatggatgatcaatggttaaatgattgtcttgtaacttatatagaaatacatgttcttt 1112089  T
Q  191 taaccgttaaaaatgatgtcattttagcccatttttaacaaatggata 238  Q
    ||||  |||| || || || |||||||  |||||| ||||||||||||    
T  1112088 taacaattaacaacgaggttattttagatcattttcaacaaatggata 1112041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 112 - 251
Target Start/End: Complemental strand, 2814157 - 2814018
Alignment:
Q  112 aagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtca 211  Q
    ||||||||| ||||||| ||| ||| |||||| | ||||||||||  | |||||||||||||||||||| ||| | |||||||  | |  |||||||| |    
T  2814157 aagagtaacctatgtaataaactggatgatcagtaactaaatgaccgtattgtaacttgtatagaaatatatgatgttttaacaataagcaatgatgtta 2814058  T
Q  212 ttttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||||||| |||||| ||||||||||||  |||||| ||||    
T  2814057 ttttagctcattttcaacaaatggatatgagacgactttc 2814018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 87 - 239
Target Start/End: Original strand, 25023145 - 25023296
Alignment:
Q  87 tgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgtt 186  Q
    ||||||||| |||  ||||||||| || ||| |  ||||||||||||||  |||||| || |||||| ||  ||||||||||| |||||||||| |||||    
T  25023145 tgttttttctgctgcgaaagttgtgaaaagtcaactatgtaacaaaatgaatgatcagtggctaaataaccgtcttgtaacttatatagaaatagatgtt 25023244  T
Q  187 cttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatag 239  Q
    ||||||||  |||  |||||| | |||||||| |||||| ||||||| |||||    
T  25023245 cttttaacaattagcaatgat-ttattttagcgcattttaaacaaatagatag 25023296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 1112146 - 1112087
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||| |||||||||| ||||||| |||||||||||||||||||||| | |||||||||||    
T  1112146 atggatgatcaatggttaaatgattgtcttgtaacttatatagaaatacatgttctttta 1112087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 2158777 - 2158718
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||||||  ||||||||||||| |||||||||| ||||||||||||||| ||||||||    
T  2158777 atgggtgattgatggctaaatgaccgtcttgtaacctatatagaaagagatcttctttta 2158718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 21 - 75
Target Start/End: Original strand, 25023196 - 25023250
Alignment:
Q  21 tgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttta 75  Q
    |||||| ||||||||| || ||||||||||||||||||||| |||||||||||||    
T  25023196 tgatcagtggctaaataaccgtcttgtaacttatatagaaatagatgttctttta 25023250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 4377313 - 4377265
Alignment:
Q  203 atgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||||||| | |||||| |||||||||||| ||||||||||||    
T  4377313 atgatgtcattttaactcattttcaacaaatggatataagacgattttc 4377265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 36247905 - 36247857
Alignment:
Q  203 atgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||||||||||||| |||||| ||||||||||||  |||||||||||    
T  36247905 atgatgtcattttagctcattttcaacaaatggatatgagacgattttc 36247857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 36248019 - 36247958
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaactt--atatagaaagagatgttctttta 75  Q
    |||| |||||| |||||||||||| || |||||||||  ||||||||||| |||||||||||    
T  36248019 atggatgatcagtggctaaatgaccgttttgtaacttacatatagaaagatatgttctttta 36247958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 57
Target Start/End: Complemental strand, 4377428 - 4377387
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatata 57  Q
    ||||||||||| |||||||||||  |||||||||||||||||    
T  4377428 atgggtgatcagtggctaaatgatcgtcttgtaacttatata 4377387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 251
Target Start/End: Complemental strand, 33518107 - 33518058
Alignment:
Q  203 atgatgtcattttagcccattttta-acaaatggatagaagacgattttc 251  Q
    |||||||||||||||| |||||||  ||||||||||| ||||||||||||    
T  33518107 atgatgtcattttagctcatttttcgacaaatggatataagacgattttc 33518058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 86 - 239
Target Start/End: Original strand, 14607675 - 14607827
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||| ||||||||||||| ||||||||| |||||||| |||| | |||| | ||||||||||| | | ||||||||||||| |||| | |||     
T  14607675 gtgttttttcacctatgaaagttgtgaagagtaacctatgtaaccaaatagatgattagtgactaaatgaatgtattgtaacttgtattgaaagatatga 14607774  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatag 239  Q
    | |||||||  | | ||||||||| |||||||| |||||| |||||||||||||    
T  14607775 t-ttttaacaataagaaatgatgttattttagctcattttcaacaaatggatag 14607827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 21883451 - 21883286
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||| |||| |||||||  |||||||| ||| |||||||||| | |||||| ||||||| ||||  | ||||||||| |||||||| | || |    
T  21883451 gtgttttttcaactataaaagttgagaagagtaaattaagtaacaaaatagatgatcagtgactaattgaccctgttgtaacttatatagaaagagatat 21883352  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    ||| | |||  |||  |||| |||||||||  | |||||| |||||||||||||||||||||||||    
T  21883351 tctataaacaattagcaatgctgtcattttttctcattttcaacaaatggatagaagacgattttc 21883286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 24901875 - 24901710
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  24901875 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 24901776  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| ||||||||||| | |||||||||||    
T  24901775 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatggcagacgattttc 24901710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 251
Target Start/End: Complemental strand, 18817106 - 18816941
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    |||||||||||||||||||  |||| |||||| | ||| ||||||||||||||||||||||  |||||||    |||||||||| ||| |||| | ||||    
T  18817106 gtgttttttcagctatgaagattgtgaagagtcatttacgtaacaaaatgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgt 18817007  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    |||||| ||  |||  | |||||| ||| |||| |||||| |||||||||||   |||||||||||    
T  18817006 tcttttcacaattagcactgatgttattctagctcattttcaacaaatggatgacagacgattttc 18816941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 251
Target Start/End: Complemental strand, 6689364 - 6689234
Alignment:
Q  123 atgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtata--gaaataaatgttcttttaaccgttaaaaatgatgtcattttagccc 220  Q
    |||||||||| ||| ||| ||||| || ||| ||| |||| |||||| ||||  |||| | ||| |||||||||  |||  ||||||||||||||||| |    
T  6689364 atgtaacaaagtggatgaacaatggctgaattactgtcttataacttatatatagaaagagatgatcttttaacaattagcaatgatgtcattttagctc 6689265  T
Q  221 atttttaacaaatggatagaagacgattttc 251  Q
    | ||| || |||||||||| |||||||||||    
T  6689264 aatttcaataaatggataggagacgattttc 6689234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 18817059 - 18817001
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  18817059 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 18817001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 24901828 - 24901770
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    ||||||||||||||| |||||||  | |||||||||| ||| |||||||||||||||||    
T  24901828 atgggtgatcaatggttaaatgatcggcttgtaacttttattgaaagagatgttctttt 24901770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 90 - 167
Target Start/End: Complemental strand, 30705478 - 30705401
Alignment:
Q  90 tttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaac 167  Q
    |||||||||||||||  |||| |||| | |  ||||||||||||| |||||||| || ||||||||| ||||||||||    
T  30705478 tttttcagctatgaagattgtgaagaatcaactatgtaacaaaatcggtgatcagtggctaaatgaccatcttgtaac 30705401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 122 - 162
Target Start/End: Complemental strand, 30705140 - 30705100
Alignment:
Q  122 tatgtaacaaaatgggtgatcaatgactaaatgactatctt 162  Q
    ||||||||||||||||||||||||| ||||||||| |||||    
T  30705140 tatgtaacaaaatgggtgatcaatggctaaatgaccatctt 30705100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 197 - 250
Target Start/End: Complemental strand, 33704198 - 33704144
Alignment:
Q  197 ttaaaaatgatgtcatttt-agcccatttttaacaaatggatagaagacgatttt 250  Q
    |||| |||||||||||||| ||| |||||||||||||| |||||||||| |||||    
T  33704198 ttaacaatgatgtcatttttagctcatttttaacaaatagatagaagacaatttt 33704144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 86 - 251
Target Start/End: Original strand, 461240 - 461404
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||||||| ||||||| ||||| || |||||| ||||| ||||||||| |||| | ||  |||| |||  | ||||||||| |||| ||| | ||||    
T  461240 gtgttttttcaactatgaa-gttgtgaaaagtaacctatgtgacaaaatggatgattagtggttaaacgaccgttttgtaacttatatataaagatatgt 461338  T
Q  186 tcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggatagaagacgattttc 251  Q
    | |||||||  |||  ||||||||||||||||| |||||| ||||||| ||||| |||||||||||    
T  461339 tattttaacaattagcaatgatgtcattttagctcattttcaacaaatagataggagacgattttc 461404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 2)
Name: scaffold0311
Description:

Target: scaffold0311; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 138 - 251
Target Start/End: Original strand, 807 - 920
Alignment:
Q  138 tgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgttcttttaaccgttaaaaatgatgtcattttagcccatttttaacaaatggat 237  Q
    ||||||||| ||||||||| |||||||||||| |||||||| | |||||||||| ||  |||  |||||||| | |||||| |||||| |||||  | ||    
T  807 tgatcaatggctaaatgaccatcttgtaacttatatagaaagatatgttcttttgacaattagcaatgatgttagtttagctcattttcaacaatcgaat 906  T
Q  238 agaagacgattttc 251  Q
    || |||||||||||    
T  907 agtagacgattttc 920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0311; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 21 - 74
Target Start/End: Original strand, 807 - 860
Alignment:
Q  21 tgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctttt 74  Q
    |||||||||||||||||||  |||||||||||||||||||||| ||||||||||    
T  807 tgatcaatggctaaatgaccatcttgtaacttatatagaaagatatgttctttt 860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0684
Description:

Target: scaffold0684; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Complemental strand, 4252 - 4196
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctt 72  Q
    ||||||||||||||   |||||| ||||||||||| |||||||||||||||||||||    
T  4252 atgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgttctt 4196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0684; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 4299 - 4196
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||| ||||||||||||  ||| |||||| |  || ||||||| ||||||||||||||   |||||| | ||||||||| | |||||||| | ||||    
T  4299 gtgttttctcagctatgaaatatgtgaagagtcaaataagtaacaagatgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgt 4200  T
Q  186 tctt 189  Q
    ||||    
T  4199 tctt 4196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 16 - 72
Target Start/End: Original strand, 3866 - 3922
Alignment:
Q  16 atgggtgatcaatggctaaatgactgtcttgtaacttatatagaaagagatgttctt 72  Q
    ||||||||||||||   |||||| ||||||||||| |||||||||||||||||||||    
T  3866 atgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgttctt 3922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 3819 - 3922
Alignment:
Q  86 gtgttttttcagctatgaaagttgttaagagtaacttatgtaacaaaatgggtgatcaatgactaaatgactatcttgtaacttgtatagaaataaatgt 185  Q
    ||||||| ||||||||||||  ||| |||||| |  || ||||||| ||||||||||||||   |||||| | ||||||||| | |||||||| | ||||    
T  3819 gtgttttctcagctatgaaatatgtgaagagtcaaataagtaacaagatgggtgatcaatgctcaaatgattgtcttgtaacatatatagaaagagatgt 3918  T
Q  186 tctt 189  Q
    ||||    
T  3919 tctt 3922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University