View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2367_high_4 (Length: 422)
Name: NF2367_high_4
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_high_4 |
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| [»] scaffold0009 (2 HSPs) |
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| [»] scaffold0031 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 157; Significance: 2e-83; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 151 - 413
Target Start/End: Complemental strand, 47650306 - 47650038
Alignment:
| Q |
151 |
ggtatgtttgtattagatttactatatcc-tata-----tttaattttatacgtaaacatctactatatttctatttgtgttatttacaggaaattagta |
244 |
Q |
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||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||||||| |
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| T |
47650306 |
ggtatgtttgtattagatttactatataaatataggtaatttaattttatacgtaaacatatactatatttctacttgtattatttacaggaaattagtt |
47650207 |
T |
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| Q |
245 |
acaggaacaaatcaaataaatctaaa-aagttattaatcatagatgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatataaaagatc |
343 |
Q |
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| T |
47650206 |
acaggaacaaatcaaataaatctaaacaagttataaatcatagatgtggaaggaagtcatttcaagccgttagctatgatgcggtaaaatataaaatatc |
47650107 |
T |
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| Q |
344 |
aaatctccannnnnnnggtatatttgtcattgacttgataacttatatgtatttatattctgtgatgatg |
413 |
Q |
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| T |
47650106 |
aaatctcc-ttttgttggtatatttgtcattgacttgataacttacatgtatttatattttgtgatgatg |
47650038 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 78; Significance: 3e-36; HSPs: 2)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 288 - 402
Target Start/End: Original strand, 170660 - 170774
Alignment:
| Q |
288 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatataaaagatcaaatctccannnnnnnggtatatttgtcattgacttgataactt |
387 |
Q |
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| T |
170660 |
tgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatatataatatcaaatctcctttttcctagtatatttgtcattgacttgataactt |
170759 |
T |
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| Q |
388 |
atatgtatttatatt |
402 |
Q |
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| T |
170760 |
atatgtatttatatt |
170774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 183 - 215
Target Start/End: Original strand, 170609 - 170641
Alignment:
| Q |
183 |
atttaattttatacgtaaacatctactatattt |
215 |
Q |
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| T |
170609 |
atttaattctatacgtaaacatctactatattt |
170641 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 237 - 413
Target Start/End: Complemental strand, 30754353 - 30754173
Alignment:
| Q |
237 |
aattagtaacaggaacaaatcaaataaatctaaa-aagttattaatcatagatgtggaaggaagtcatttcaagctgttagctatgacgcggtaaaatat |
335 |
Q |
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||||||||| |||||||||| |||||| |||||| ||||||||||| |||| |||||||||| | |||||||| ||||||||||||||||||| ||||| |
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| T |
30754353 |
aattagtaaaaggaacaaattaaataagtctaaacaagttattaattgtagacgtggaaggaatttatttcaagttgttagctatgacgcggtataatat |
30754254 |
T |
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| Q |
336 |
---aaaagatcaaatctccannnnnnnggtatatttgtcattgacttgataacttatatgtatttatattctgtgatgatg |
413 |
Q |
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|||| || ||||||| ||||||||| |||||||||||||||||||||| || ||||||| |||||||||| |
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| T |
30754253 |
aaaaaaatataaaatctctctttttttggtatatttatcattgacttgataacttatatctaattatattttgtgatgatg |
30754173 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 206 - 285
Target Start/End: Complemental strand, 37332924 - 37332844
Alignment:
| Q |
206 |
tactatatttctatttgtgttatttacaggaaattagtaacaggaacaaatcaaataaatctaaa-aagttattaatcata |
285 |
Q |
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| T |
37332924 |
tactatatttctatttgtattatttacaggcaattagcgaaaggaacaaatcaaataaagcaaaacaagttattaatcata |
37332844 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0031 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0031
Description:
Target: scaffold0031; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 360 - 413
Target Start/End: Complemental strand, 92250 - 92197
Alignment:
| Q |
360 |
ggtatatttgtcattgacttgataacttatatgtatttatattctgtgatgatg |
413 |
Q |
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| T |
92250 |
ggtatatttatcattgacttgataacttatatgtatttatattttgtgacgatg |
92197 |
T |
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