View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2367_high_7 (Length: 322)
Name: NF2367_high_7
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 17 - 313
Target Start/End: Original strand, 4818227 - 4818522
Alignment:
| Q |
17 |
ataaaaagtgaaaatcatactttataaaccaattattattaggtctgtctaaatgttttagaaaatccgaacatgctaatactgcccctttgagaaagtg |
116 |
Q |
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| T |
4818227 |
ataaaaagtgaaaatcatactttataaaccaattattattaggtctgtctaaatgttttagaaaatccgaacatgctaatactgcccgtttgagaaagtg |
4818326 |
T |
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| Q |
117 |
gggaaaagcatagtcttcctgtatgtggtcatgaattgtggactcacatattagcaaaatggtcggattctattttagaaacaaagacgttttggagctt |
216 |
Q |
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| T |
4818327 |
gggaaaagcatagtcttcctgtatgtggtcatgaattgtggactcacagattagtaaaatggtcggattctattttagaaacaaagacgttttggagctt |
4818426 |
T |
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| Q |
217 |
tctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagactccaaatcttcaagatatcttacaaagatagagactaatttgatgat |
313 |
Q |
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| T |
4818427 |
tctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagactcc-aatcatcaagatatcttacaaagatagagactaatttgatgat |
4818522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 129 - 267
Target Start/End: Original strand, 4715263 - 4715400
Alignment:
| Q |
129 |
gtcttcctgtatgtggtcatgaattgtggactcacatattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgacta |
228 |
Q |
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| T |
4715263 |
gtcttcctgtat-tggtcatgaattgtggactcacagattagcaaaatggtcggattctattttagaaacaaagacgttttggagctttctgcgtgacta |
4715361 |
T |
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| Q |
229 |
tgctctaattatcttagatgccaaaatgttccaaagact |
267 |
Q |
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| T |
4715362 |
tgctttaattatcttagatgccaaaatgttcctaagact |
4715400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 185 - 267
Target Start/End: Original strand, 4790010 - 4790092
Alignment:
| Q |
185 |
tctattttagaaacaaagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagact |
267 |
Q |
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| T |
4790010 |
tctattttagaaacaaagacgttttcgagctttctgcgtgactatgctttaattatcttagatgccaaaatgttccaaagact |
4790092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 99 - 132
Target Start/End: Original strand, 4789979 - 4790012
Alignment:
| Q |
99 |
tgcccctttgagaaagtggggaaaagcatagtct |
132 |
Q |
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| T |
4789979 |
tgcccctttgagaaagtggggaaaagcatagtct |
4790012 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 200 - 267
Target Start/End: Original strand, 4700970 - 4701035
Alignment:
| Q |
200 |
aagacgttttggagctttctgcgtgactatgctctaattatcttagatgccaaaatgttccaaagact |
267 |
Q |
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| T |
4700970 |
aagacgttttggagctttctctgtgactat--tttaaatatcttagatggcaaaatattccaaagact |
4701035 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 97
Target Start/End: Original strand, 4789934 - 4789966
Alignment:
| Q |
65 |
ctaaatgttttagaaaatccgaacatgctaata |
97 |
Q |
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| T |
4789934 |
ctaaatgttttagaaaatccaaacatgctaata |
4789966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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