View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2367_high_8 (Length: 301)
Name: NF2367_high_8
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_high_8 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 249; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 1518143 - 1517875
Alignment:
| Q |
16 |
agcacagattcataccttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttg |
115 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1518143 |
agcacagactcataccttaatgatccttggtcagaaaaacatcaaataaatactggattttactttgcgaggtcgaataacaagaccatatctttgtttg |
1518044 |
T |
|
| Q |
116 |
aaatatggtatggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaa |
215 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
1518043 |
aaatatggaatggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactaaa |
1517944 |
T |
|
| Q |
216 |
tgttaggttcttggatactctctattttagtggattttgtcaagatagtaaagactttagggcagtgac |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1517943 |
tgttaggttcttggatactctctattttagtggattttgtcaagatagtaaagactttagggaagtgac |
1517875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 27 - 281
Target Start/End: Complemental strand, 1512929 - 1512675
Alignment:
| Q |
27 |
ataccttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtat |
126 |
Q |
| |
|
||||||| |||||||||||||||||||||| || ||||||||||||| ||| | |||||| ||||| ||||||||||| |||||||||| ||||||| |
|
|
| T |
1512929 |
ataccttggtgatccttggtcagaaaaacatttgatcaatactggatttttctttgtgaggtcaaataaaaagaccatatccttgtttgaaacatggtat |
1512830 |
T |
|
| Q |
127 |
ggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttct |
226 |
Q |
| |
|
|||| |||||| ||||||||||| ||||||||||||||||||||| |||||||||||| || ||||||| |||||||||| || ||||| ||||| |||| |
|
|
| T |
1512829 |
ggaaagaaagacaattccacaggtaaaaaggagcaagatgtgcttattgacctcattgaagctggtatatttggacatttagggctcaaggttagattct |
1512730 |
T |
|
| Q |
227 |
tggatactctctattttagtggattttgtcaagatagtaaagactttagggcagt |
281 |
Q |
| |
|
||||||| || ||||||||||||||||| ||||| |||||||| |||||||||| |
|
|
| T |
1512729 |
tggataccctttattttagtggattttgccaagacagtaaagatgttagggcagt |
1512675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 278
Target Start/End: Complemental strand, 1522486 - 1522244
Alignment:
| Q |
36 |
tgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttgaaatatggtatggaatgaaa |
135 |
Q |
| |
|
||||||||||||||||||| ||| | | ||||||||||||| ||| | ||| || || ||||||||||||||||||||||| | |||||||||||||||| |
|
|
| T |
1522486 |
tgatccttggtcagaaaaaaatcgagtcaatactggatttttctttgtgagatcaaacaacaagaccatatctttgtttgagacatggtatggaatgaaa |
1522387 |
T |
|
| Q |
136 |
gataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaatgttaggttcttggatactc |
235 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||| ||||||||| |||||||||| || || |||||||| |||| | |||||||||||||| | |
|
|
| T |
1522386 |
gataatttcacagaaaaaaaggagcaagatgtgcttgaggacctcattaaaggtggtatatttcgagatttgggaatcaaggcaaggttcttggataccc |
1522287 |
T |
|
| Q |
236 |
tctattttagtggattttgtcaagatagtaaagactttagggc |
278 |
Q |
| |
|
||||||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
1522286 |
tctattttagtggattttgccaagatagtaaagattttagggc |
1522244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 173; Significance: 5e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 5e-93
Query Start/End: Original strand, 16 - 284
Target Start/End: Complemental strand, 16643814 - 16643546
Alignment:
| Q |
16 |
agcacagattcataccttaatgatccttggtcagaaaaacatcaaataaatactggattttacttcgcgaggtcgaataacaagaccatatctttgtttg |
115 |
Q |
| |
|
|||||||||| ||| ||| |||||||||||||||||||||| ||| ||||| ||||||||||| | ||||| ||||||||||||||||||||||||| |
|
|
| T |
16643814 |
agcacagatttatatcttgatgatccttggtcagaaaaacacagaatcaataccggattttactttgtaaggtccaataacaagaccatatctttgtttg |
16643715 |
T |
|
| Q |
116 |
aaatatggtatggaatgaaagataattccacaggaaaaaaggagcaagatgtgcttcttgacctcattggaggtggtataattggacatttgggactcaa |
215 |
Q |
| |
|
||| ||||||||||| |||||| ||||||||||||||||| ||||||||||| ||||||||||||||| || ||||||||||||||| ||||||||||| |
|
|
| T |
16643714 |
aaacatggtatggaaagaaagacaattccacaggaaaaaaagagcaagatgttcttcttgacctcattagacatggtataattggacacttgggactcaa |
16643615 |
T |
|
| Q |
216 |
tgttaggttcttggatactctctattttagtggattttgtcaagatagtaaagactttagggcagtgac |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
|
|
| T |
16643614 |
ggttaggttcttggatactctctattttagtggtttttgtcaagatagtaaagattttagggcagtgac |
16643546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University