View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2367_low_1 (Length: 813)
Name: NF2367_low_1
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_low_1 |
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Alignment Details
Target: chr3 (Bit Score: 633; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 633; E-Value: 0
Query Start/End: Original strand, 33 - 746
Target Start/End: Original strand, 52444737 - 52445451
Alignment:
| Q |
33 |
ttcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattcacaaacaataacaataatagattgctctatgagcaaacataaacacacaaaa |
132 |
Q |
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| T |
52444737 |
ttcaaaagtctagcagagctttaatcgtgtttcaagagtacttaattca-aaacaataacaataatagattgctctatgagcaaacataaacacaaaaaa |
52444835 |
T |
|
| Q |
133 |
tgcaaaaagtacttgctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccac |
232 |
Q |
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| T |
52444836 |
tgcaaaaagtactttctccatgagcaaacataaacaagttccaaaagctaaacaaaagggaaaccaacagcaaatgaacacctcaaggagcatctcccac |
52444935 |
T |
|
| Q |
233 |
aacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgtgaaagtagtatggagcctcccatctaagctggcaaagagg |
332 |
Q |
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| T |
52444936 |
aacacccgcaacaccctcccctcctggtagcctctcatgcaaaaaggcatagagctgcgcgaaagtagcatggagcctcccatctaagctggcaaagagg |
52445035 |
T |
|
| Q |
333 |
cctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcaagaaccttagcaatcc |
432 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
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| T |
52445036 |
cctctcaccgcatcttcagtgagtgcttgctgctgcagattcaaaacttggttctgcagctccgcaatcttcgcaacatgagcacggaccttagcaatcc |
52445135 |
T |
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| Q |
433 |
taacacaaagataaggtgttgcactgccacgcctgtgcatgaccctaatttgcatcatgcactgctccacggacttgtcagccatgtcatgctcgtacac |
532 |
Q |
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| T |
52445136 |
taacacaaagataaggtgttgcactgccacgcctgtgcatgaccttaatttgcatcatgcactgctccacgtacttgtcagccatgtcatgctcgtacat |
52445235 |
T |
|
| Q |
533 |
aatgtcattcttgatgacatccatatgatattcatgctcagccactcctttgtaaagtatgacctttctaacatacttaaatttgtccacgagaacgata |
632 |
Q |
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| T |
52445236 |
aatgtcattcttgatgacatccatatgatatccatgctcagccactccttcgtaaagtatgacctttctaacatacttaaatttgtccacgagaacgaga |
52445335 |
T |
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| Q |
633 |
ttttcagacacatgataatcaggcaaggcaaaggaaatgcaacaatgtccacgaatccatcaaccacaaac--ttggagcaatccaccagcaatggtaag |
730 |
Q |
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| T |
52445336 |
tcttcggacacataataatcaggcaaggcaaaggaaatgcaacaatgtccacgaatccatcaaccacaaactgttggagcaatccaccagcaatggtaag |
52445435 |
T |
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| Q |
731 |
gacctccatcggagat |
746 |
Q |
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| T |
52445436 |
gacctccgtcggagat |
52445451 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 744 - 813
Target Start/End: Original strand, 52445741 - 52445810
Alignment:
| Q |
744 |
gatttaattaaagacatatttatacacaccttatcctttaattgactatcaatatgtttaatttcttctt |
813 |
Q |
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| T |
52445741 |
gatttaattaaagacatatttatacacaccttatcctttaattgaatatcaatatgtttaatttcttctt |
52445810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 749 - 811
Target Start/End: Original strand, 52447657 - 52447719
Alignment:
| Q |
749 |
aattaaagacatatttatacacaccttatcctttaattgactatcaatatgtttaatttcttc |
811 |
Q |
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||||||| |||||| ||||||| |||||||||||||||| | |||| ||||||||||||||| |
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| T |
52447657 |
aattaaattcatattaatacacatcttatcctttaattgaatttcaacatgtttaatttcttc |
52447719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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