View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2367_low_2 (Length: 541)
Name: NF2367_low_2
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_low_2 |
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Alignment Details
Target: chr3 (Bit Score: 399; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 399; E-Value: 0
Query Start/End: Original strand, 52 - 494
Target Start/End: Complemental strand, 17003446 - 17003004
Alignment:
| Q |
52 |
taatagccgcaaaatttatgcaaaatcgttatcttaagcaggtgttcttactggaaagtatactccacgaaatcctccatctgggcctcgaggtagaatt |
151 |
Q |
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| T |
17003446 |
taatagccgcaaaatttatgcaaaatcgttatcttaagcaggtgttcttactggaaagtatactccacgaaatcctccatctgggcctcgaggtagaatt |
17003347 |
T |
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| Q |
152 |
tatactccagaattcctaacaaaggtacaacttttctgaaatttccgtatccaatgaatgataccgatattacttggttcctcaagtgtttatttgtttt |
251 |
Q |
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| T |
17003346 |
tatactccagaattcttaacaaaggtacaacttttctgaaatttccgtatctaatgaattataccgatagtacttggttcctcaaatgtttatttgtttt |
17003247 |
T |
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| Q |
252 |
gcagcttcaaccactgctaaagaagatcactgaaataggagacaagtacaataaaacttctacacaggttcatacttttctttatttccatgaaataagt |
351 |
Q |
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| T |
17003246 |
gcagcttcaaccactgctaaagaagatcactgaaataggagagaaatacaataaaacttctacacaggttcatacttttctttatttccatgaaataagt |
17003147 |
T |
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| Q |
352 |
tgaaaattagaaatattagtataatgtttgtgtcatcctgctttaacaatgtagtctgtttgtgtcatcctgacttgtttccgaaggagttttatgatta |
451 |
Q |
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| T |
17003146 |
tgaaaattagaaatattagtataatgtttgtgtcatcctgctttaacaatatagtctgtttgtgtcatcctgccttgtttccgaaggagttttatgatta |
17003047 |
T |
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| Q |
452 |
gagactgagatagtatagcatagaatttgttctgtgagaatca |
494 |
Q |
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| T |
17003046 |
gaaacagagatagtatagcatagaatttgttctgtgagaatca |
17003004 |
T |
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