View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2367_low_3 (Length: 514)
Name: NF2367_low_3
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 6 - 498
Target Start/End: Complemental strand, 7849082 - 7848591
Alignment:
| Q |
6 |
gtgagatgaataaatggattaaacttaattactatgatgatcaaattttgttttatattgacgctgctgcctacaaatggatttgacttatcttgttatc |
105 |
Q |
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| T |
7849082 |
gtgatatgaataaatggattaaacttaattactatgatgatcaaattttgttttatattgacgctgctgcctacaaatggatttgatttatcttgttatc |
7848983 |
T |
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| Q |
106 |
tgtttctgctattaagccatggacttcctttagatatattattttagaacttggctactctaaagtgaaaaagtcattttggaggaaaaagcaagtaatt |
205 |
Q |
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| T |
7848982 |
tgtttctgctattaagccatggacttcctttagatatattattttagaacttggctactctaaagtgaaaaagtcattttggaggaaaaagcaagtaatt |
7848883 |
T |
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| Q |
206 |
atagccattgatagtaaaattaatcatatgcatgtagataaattataaactaagaagttaattaaatcttaaccgttgattttctattcattgactatat |
305 |
Q |
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| T |
7848882 |
atagccattgatagtaaaattaatcatatgcatgtagataaattataaactaagaagttaattaaatcttaaccgttgattttctattcattgactatat |
7848783 |
T |
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| Q |
306 |
catcccactattccctttaaagtgaggcactaaatcaattatattcacgtttcactatcagtactttatttgcagaaattgtggtgaagtttgtctttaa |
405 |
Q |
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| T |
7848782 |
catcccactattccctttaaagtgaggcactaaatcaattata-tcacgtttcactatcagtactttatttgcagaaattgtggtaaagtttgtctttaa |
7848684 |
T |
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| Q |
406 |
ctacctttgactatttcaatttttctgcaagggtttggattatgcaatgatgaccggaggagatgttgcacctctgggcccacaggctgttac |
498 |
Q |
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| T |
7848683 |
ctacctttgactatttcaatttttctgcaagggtttggattatgcaatgatgaccggaggagatgttgcacctctgggcccacaggctgttac |
7848591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 9e-25; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 6 - 132
Target Start/End: Complemental strand, 21625584 - 21625453
Alignment:
| Q |
6 |
gtgagatgaataaatggattaaacttaattactatgatgatcaaattttgttttatattgac----gctgctgcctacaaatggatttgacttatcttgt |
101 |
Q |
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|||| |||||||||| |||||| |||| ||||||||| |||||||||||||||||||||||| |||| ||||||||||| |||||| |||||||||| |
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| T |
21625584 |
gtgatatgaataaatcgattaagcttagttactatgaagatcaaattttgttttatattgacgctggctgatgcctacaaatagatttgtcttatcttgt |
21625485 |
T |
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| Q |
102 |
tatctgtttctgct-attaagccatggacttc |
132 |
Q |
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| T |
21625484 |
tatgtgtctctgctaattaagtcatagacttc |
21625453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 435 - 495
Target Start/End: Original strand, 1010423 - 1010483
Alignment:
| Q |
435 |
agggtttggattatgcaatgatgaccggaggagatgttgcacctctgggcccacaggctgt |
495 |
Q |
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| T |
1010423 |
agggattggattatgcattgatgactgggggagatgttgctccactgggatcacaggctgt |
1010483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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