View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2367_low_5 (Length: 327)

Name: NF2367_low_5
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2367_low_5
NF2367_low_5
[»] chr4 (23 HSPs)
chr4 (19-321)||(50251041-50251343)
chr4 (148-280)||(45372419-45372551)
chr4 (164-248)||(7822585-7822669)
chr4 (151-247)||(7904649-7904745)
chr4 (147-286)||(7238081-7238220)
chr4 (147-206)||(49041499-49041558)
chr4 (150-212)||(7771056-7771118)
chr4 (144-285)||(7774187-7774328)
chr4 (147-248)||(7907941-7908042)
chr4 (147-212)||(48891061-48891126)
chr4 (166-248)||(7813096-7813178)
chr4 (179-285)||(50668622-50668728)
chr4 (147-215)||(48170947-48171018)
chr4 (150-286)||(7789667-7789803)
chr4 (164-248)||(7800253-7800337)
chr4 (144-200)||(7877384-7877440)
chr4 (150-248)||(45366582-45366683)
chr4 (147-218)||(48156788-48156859)
chr4 (148-206)||(48862899-48862960)
chr4 (179-285)||(48902529-48902635)
chr4 (152-218)||(50672166-50672232)
chr4 (147-248)||(49044590-49044691)
chr4 (151-218)||(48898368-48898438)
[»] chr3 (2 HSPs)
chr3 (156-286)||(11006332-11006462)
chr3 (178-248)||(47452299-47452369)
[»] chr5 (2 HSPs)
chr5 (147-242)||(29687673-29687768)
chr5 (148-283)||(1812006-1812141)
[»] chr8 (3 HSPs)
chr8 (159-215)||(12199956-12200012)
chr8 (159-215)||(12444384-12444440)
chr8 (147-261)||(15348465-15348579)
[»] scaffold0508 (1 HSPs)
scaffold0508 (148-212)||(11914-11978)
[»] chr1 (1 HSPs)
chr1 (148-200)||(24309841-24309893)
[»] chr6 (1 HSPs)
chr6 (164-218)||(21980022-21980076)


Alignment Details
Target: chr4 (Bit Score: 291; Significance: 1e-163; HSPs: 23)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 19 - 321
Target Start/End: Original strand, 50251041 - 50251343
Alignment:
Q  19 aaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgaggtgaatcttccattatggctagaa 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50251041 aaacaagacttagtaaggttcactaaagaagcataatagtgggacgattcaaaatctatagaataaacttcatgaggtgaatcttccattatggctagaa 50251140  T
Q  119 ttctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 218  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  50251141 ttctaggaggagtttgtgcagtggaggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacccactt 50251240  T
Q  219 taattgtatgagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgaggcagatacacttttggctgtgtcttcctctccatcctttgc 318  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  50251241 taattgtataagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgaggcagatacacttttggctgtgtcttcttctccatcctttgc 50251340  T
Q  319 ttc 321  Q
    |||    
T  50251341 ttc 50251343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 148 - 280
Target Start/End: Original strand, 45372419 - 45372551
Alignment:
Q  148 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacc 247  Q
    |||| |||||||||  |||||||| | || ||||||||||||| |||||||||||||||| ||||||| || ||  |||| |||| |||||| |||||||    
T  45372419 gtaatttgaaaatgtgaatttgcaaaatgaggatcagagataatagaaaaccaagacttacaaacacatttgaaacgtataagagacttcaccggcaacc 45372518  T
Q  248 taactaaaatttgagtgatcaattcgtgaggca 280  Q
    | | || ||||||| | |||||||| |||||||    
T  45372519 ttagtagaatttgaatcatcaattcatgaggca 45372551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 7822669 - 7822585
Alignment:
Q  164 aatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 248  Q
    |||||||| |||||||||||||||||||||||||||| || ||| |||||||||| ||  |||| |||  |||||| ||||||||    
T  7822669 aatttgcaaagtggggatcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7822585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 151 - 247
Target Start/End: Complemental strand, 7904745 - 7904649
Alignment:
Q  151 agttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacc 247  Q
    |||||||||||  |||||||| |||| |||||||||||||||||||||||  ||||| ||||||| || ||  |||| |||| |||||| |||||||    
T  7904745 agttgaaaatgtgaatttgcaaagtgaggatcagagataagagaaaaccataacttacaaacacatttgaaacgtataagagacttcacaggcaacc 7904649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 286
Target Start/End: Original strand, 7238081 - 7238220
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 246  Q
    |||| |||| |||||  |||||||| |||| || ||||||||||||||||||||||||||| ||||||| || ||    || |||| |||||||||||||    
T  7238081 ggtatgttggaaatgtgaatttgcaaagtgagggtcagagataagagaaaaccaagacttacaaacacatttgaaacagataagagacttcactggcaac 7238180  T
Q  247 ctaactaaaatttgagtgatcaattcgtgaggcagataca 286  Q
    || |  | ||||||  |||| | ||| |||||||||||||    
T  7238181 ctcatcagaatttggatgattagttcatgaggcagataca 7238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 49041499 - 49041558
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagactt 206  Q
    |||||||| ||||||  |||||||| | ||||||||||||||||||||||||||||||||    
T  49041499 ggtaagttaaaaatgagaatttgcaaaatggggatcagagataagagaaaaccaagactt 49041558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 150 - 212
Target Start/End: Complemental strand, 7771118 - 7771056
Alignment:
Q  150 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 212  Q
    ||||||||||||  ||||| || |||| |||||||||||||||||||||||||||||| ||||    
T  7771118 aagttgaaaatgtgaattttcaaagtgaggatcagagataagagaaaaccaagacttacaaac 7771056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 144 - 285
Target Start/End: Original strand, 7774187 - 7774328
Alignment:
Q  144 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggc 243  Q
    |||||| |||||||||||  |||||||| | ||||||||||||||||||||||||||   |||| ||||||| || || || || |||| |||||| |||    
T  7774187 ggtggtgagttgaaaatgtgaatttgcaaaatggggatcagagataagagaaaaccatagcttacaaacacatttgaaatgaataagagacttcaccggc 7774286  T
Q  244 aacctaactaaaatttgagtgatcaattcgtgaggcagatac 285  Q
    | ||  |  || |||||| | |||||||| ||||| ||||||    
T  7774287 agccgcatcaagatttgaataatcaattcatgaggaagatac 7774328  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 248
Target Start/End: Complemental strand, 7908042 - 7907941
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 246  Q
    |||||||||||||||  |||||||| | |||||| ||||||||||||||||||| ||||||  |||| |||| ||  || | |||| |||||| ||||||    
T  7908042 ggtaagttgaaaatgtgaatttgcaaaatggggagcagagataagagaaaaccatgacttacgaacagacttgaaacgtgtaagagacttcaccggcaac 7907943  T
Q  247 ct 248  Q
    ||    
T  7907942 ct 7907941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 147 - 212
Target Start/End: Complemental strand, 48891126 - 48891061
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 212  Q
    |||||||||||||||| |||||||| | || ||||| |||| ||||||||||||||||||| ||||    
T  48891126 ggtaagttgaaaatgcgaatttgcaaaatgaggatctgagacaagagaaaaccaagacttacaaac 48891061  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 248
Target Start/End: Complemental strand, 7813178 - 7813096
Alignment:
Q  166 tttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 248  Q
    |||||| ||||||| |||||||||||||||||||| || ||| |||||||||| ||  |||| |||  |||||| ||||||||    
T  7813178 tttgcaaagtggggttcagagataagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7813096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 50668728 - 50668622
Alignment:
Q  179 gatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgagg 278  Q
    |||| ||||| |||||||||||||| ||| |||| ||||| ||  |||| |||   ||||| |||||||| || ||||||||| |||||||||||| | |    
T  50668728 gatcggagatgagagaaaaccaagatttacaaacgcacttgaaacgtataagatatttcacgggcaacctcaccaaaatttgaatgatcaattcgtaatg 50668629  T
Q  279 cagatac 285  Q
    |||||||    
T  50668628 cagatac 50668622  T

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Target: chr4; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 147 - 215
Target Start/End: Original strand, 48170947 - 48171018
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagacttagaaacaca 215  Q
    ||||| |||||||||| |||||||| |||| ||||||   |||||||||| ||||||||||||| |||||||    
T  48170947 ggtaatttgaaaatgcgaatttgcaaagtgaggatcatgagagataagagcaaaccaagacttacaaacaca 48171018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 150 - 286
Target Start/End: Complemental strand, 7789803 - 7789667
Alignment:
Q  150 aagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaaccta 249  Q
    ||||||||||||  ||||| || |||| ||||| ||||||| |||||||||||||||| |||| || || ||   ||| |||| |||||| ||||||||     
T  7789803 aagttgaaaatgtgaattttcaaagtgaggatcggagataaaagaaaaccaagacttacaaacgcatttgaaacatataagagacttcaccggcaacctc 7789704  T
Q  250 actaaaatttgagtgatcaattcgtgaggcagataca 286  Q
    |  | ||||||  | |||| ||| |||||||||||||    
T  7789703 atcagaatttggattatcagttcatgaggcagataca 7789667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 7800337 - 7800253
Alignment:
Q  164 aatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 248  Q
    |||||||| || |||||||||||| |||||||||||| || ||| |||||||||| ||  |||| |||  |||||| ||||||||    
T  7800337 aatttgcaaagcggggatcagagacaagagaaaaccatgatttacaaacacacttgaaacgtataagatacttcaccggcaacct 7800253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 7877440 - 7877384
Alignment:
Q  144 ggtggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 200  Q
    |||||| |||||||||||  |||||||| | | ||||||||||||||||||||||||    
T  7877440 ggtggtgagttgaaaatgtgaatttgcaaaattgggatcagagataagagaaaacca 7877384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 150 - 248
Target Start/End: Original strand, 45366582 - 45366683
Alignment:
Q  150 aagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 246  Q
    ||||||||||||  |||||||| |||| | ||||   |||||||||||||||||| ||||| |||| ||||| ||  |||| |||| ||||||||| |||    
T  45366582 aagttgaaaatgtgaatttgcaaagtgtgaatcacgagagataagagaaaaccaatacttacaaacgcacttgaaacgtataagagacttcactggtaac 45366681  T
Q  247 ct 248  Q
    ||    
T  45366682 ct 45366683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 147 - 218
Target Start/End: Original strand, 48156788 - 48156859
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 218  Q
    ||||| |||||||||  |||||||| | || | ||| |||||||||||||||||||||||| |||| |||||    
T  48156788 ggtaatttgaaaatgagaatttgcaaaatgagtatcggagataagagaaaaccaagacttacaaacgcactt 48156859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 148 - 206
Target Start/End: Complemental strand, 48862960 - 48862899
Alignment:
Q  148 gtaagttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagactt 206  Q
    ||||||||||||||  |||||||| |||| ||||||   |||||||||||||||||||||||    
T  48862960 gtaagttgaaaatgtgaatttgcaaagtgaggatcatgagagataagagaaaaccaagactt 48862899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 179 - 285
Target Start/End: Complemental strand, 48902635 - 48902529
Alignment:
Q  179 gatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaaatttgagtgatcaattcgtgagg 278  Q
    ||||||| ||||||||||||||||||||| ||||||| || ||  | ||||||| ||| || |||||||     ||||||||  |||||||||| |||||    
T  48902635 gatcagatataagagaaaaccaagacttacaaacacatttgaaacgaatgagagactttaccggcaaccactgcaaaatttggatgatcaattcatgagg 48902536  T
Q  279 cagatac 285  Q
     ||||||    
T  48902535 tagatac 48902529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 152 - 218
Target Start/End: Complemental strand, 50672232 - 50672166
Alignment:
Q  152 gttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 218  Q
    ||||||| ||||| |||||| | | | |||||||||| ||||||| ||| |||||||||||||||||    
T  50672232 gttgaaagtgcaattttgcaaaattgtgatcagagatgagagaaagccatgacttagaaacacactt 50672166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 147 - 248
Target Start/End: Original strand, 49044590 - 49044691
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 246  Q
    ||||| || ||||||  |||||||| ||||||  | ||||||||||||||||||  ||||| |||||||||| ||  |||  |||| | |||||||||||    
T  49044590 ggtaatttcaaaatgtgaatttgcaaagtgggtttgagagataagagaaaaccataacttacaaacacacttgaaacgtaaaagagacatcactggcaac 49044689  T
Q  247 ct 248  Q
    ||    
T  49044690 ct 49044691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 218
Target Start/End: Complemental strand, 48898438 - 48898368
Alignment:
Q  151 agttgaaaatgcaaatttgcacagtggggatca---gagataagagaaaaccaagacttagaaacacactt 218  Q
    |||||||||||  |||||||| |||||| ||||   |||||||| || |||||||||||| ||||||||||    
T  48898438 agttgaaaatgtgaatttgcaaagtgggcatcatgagagataagtgagaaccaagacttacaaacacactt 48898368  T

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Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 156 - 286
Target Start/End: Original strand, 11006332 - 11006462
Alignment:
Q  156 aaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacctaactaaa 255  Q
    ||||||| | |||||| |||| ||||||||||||||||  ||||| |||||| |||||||||| ||  |||| || | |||||| |||||||| |  ||     
T  11006332 aaaatgcgattttgcaaagtgaggatcagagataagagttaaccatgacttacaaacacacttgaaacgtataagtgacttcaccggcaacctcaacaag 11006431  T
Q  256 atttgagtgatcaattcgtgaggcagataca 286  Q
    |||||  |||||||||| |||||||||||||    
T  11006432 atttgtatgatcaattcatgaggcagataca 11006462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 248
Target Start/End: Original strand, 47452299 - 47452369
Alignment:
Q  178 ggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacct 248  Q
    ||||||||||||||||||||||| ||||||||||  ||||| ||  |||  |||| |||||| ||||||||    
T  47452299 ggatcagagataagagaaaaccatgacttagaaatgcacttgaagcgtacaagagacttcaccggcaacct 47452369  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 147 - 242
Target Start/End: Complemental strand, 29687768 - 29687673
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactgg 242  Q
    |||||||||||||||  |||||||| |||| || | ||| || |||||||||||||||||| |||||||||| ||  |||| |||| |||||||||    
T  29687768 ggtaagttgaaaatgagaatttgcaaagtgaggttgagatatgagagaaaaccaagacttacaaacacacttgaagcgtataagagacttcactgg 29687673  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 148 - 283
Target Start/End: Complemental strand, 1812141 - 1812006
Alignment:
Q  148 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaacc 247  Q
    ||||||||||||||  |||||||| |||||||||  |||||||||||||||||  ||||| |||| || ||  |  ||||||||  ||||||||| ||||    
T  1812141 gtaagttgaaaatgataatttgcaaagtggggatttgagataagagaaaaccataacttacaaacccatttggaacgtatgagatacttcactggtaacc 1812042  T
Q  248 taactaaaatttgagtgatcaattcgtgaggcagat 283  Q
    | |  |||||||||  ||||| ||| ||||| ||||    
T  1812041 tcaacaaaatttgaacgatcagttcctgaggaagat 1812006  T

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Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 12200012 - 12199956
Alignment:
Q  159 atgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacaca 215  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||| |||||||    
T  12200012 atgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacaca 12199956  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 159 - 215
Target Start/End: Complemental strand, 12444440 - 12444384
Alignment:
Q  159 atgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacaca 215  Q
    |||| |||||||| |||| ||||||||||||||||||||||| |||||| |||||||    
T  12444440 atgcgaatttgcaaagtgaggatcagagataagagaaaaccatgacttacaaacaca 12444384  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 147 - 261
Target Start/End: Complemental strand, 15348579 - 15348465
Alignment:
Q  147 ggtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactttaattgtatgagagccttcactggcaac 246  Q
    ||||| |||||||||  |||||||  |||  |||||||||||||||||||||||||||||| |||| || || ||  |||| |||| |||||| || |||    
T  15348579 ggtaatttgaaaatgtgaatttgcgaagtaaggatcagagataagagaaaaccaagacttacaaacgcatttgaaacgtataagagacttcaccggtaac 15348480  T
Q  247 ctaactaaaatttga 261  Q
    ||  ||| |||||||    
T  15348479 ctctctagaatttga 15348465  T

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Target: scaffold0508 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0508
Description:

Target: scaffold0508; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 212
Target Start/End: Complemental strand, 11978 - 11914
Alignment:
Q  148 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaaccaagacttagaaac 212  Q
    ||||||||||||||  |||||||| ||||   ||||||||||||||||||||| |||||| ||||    
T  11978 gtaagttgaaaatgtgaatttgcaaagtgattatcagagataagagaaaaccatgacttacaaac 11914  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 148 - 200
Target Start/End: Complemental strand, 24309893 - 24309841
Alignment:
Q  148 gtaagttgaaaatgcaaatttgcacagtggggatcagagataagagaaaacca 200  Q
    ||||||||||||||  |||||||| |||| | |||||||||||||||||||||    
T  24309893 gtaagttgaaaatgtgaatttgcaaagtgagaatcagagataagagaaaacca 24309841  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 164 - 218
Target Start/End: Original strand, 21980022 - 21980076
Alignment:
Q  164 aatttgcacagtggggatcagagataagagaaaaccaagacttagaaacacactt 218  Q
    |||| ||| ||| ||||| |||||| |||||||||||||||||| ||||||||||    
T  21980022 aattcgcaaagttgggatgagagatgagagaaaaccaagacttacaaacacactt 21980076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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