View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2367_low_6 (Length: 324)
Name: NF2367_low_6
Description: NF2367
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2367_low_6 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 212 - 309
Target Start/End: Complemental strand, 13503997 - 13503900
Alignment:
| Q |
212 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcattgtcttttgtgtaattaa |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13503997 |
gtctcgtattaatgattgaaaagtgcctctcacactataaagcaaccccttccataatcccaattcatttcatttttcacagtcttttgtgtaattaa |
13503900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 53 - 152
Target Start/End: Complemental strand, 13504158 - 13504057
Alignment:
| Q |
53 |
tcaacacatattttcgtaattatagcggttcatgccccgtgtgaaaatcaatggaataacta--acgaccatataactataaggtaattatacattcttg |
150 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13504158 |
tcaacacatattttcgtaattatagcggttcatgtcccgtgtgaaaatcaatggaataactaacacgaccatataactataaggtaattatacattcttg |
13504059 |
T |
|
| Q |
151 |
tc |
152 |
Q |
| |
|
|| |
|
|
| T |
13504058 |
tc |
13504057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University