View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF2368_high_2 (Length: 437)

Name: NF2368_high_2
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF2368_high_2
NF2368_high_2
[»] chr7 (8 HSPs)
chr7 (19-430)||(32562523-32562934)
chr7 (118-375)||(5459397-5459652)
chr7 (368-430)||(32562150-32562212)
chr7 (138-269)||(4123020-4123150)
chr7 (171-291)||(4514208-4514328)
chr7 (225-291)||(21019822-21019888)
chr7 (384-417)||(19650499-19650532)
chr7 (226-291)||(39227766-39227831)
[»] chr4 (10 HSPs)
chr4 (111-416)||(20748140-20748443)
chr4 (133-317)||(16404374-16404559)
chr4 (111-310)||(17651280-17651480)
chr4 (203-414)||(17743551-17743757)
chr4 (134-261)||(39938421-39938547)
chr4 (247-294)||(6116088-6116135)
chr4 (118-267)||(23692500-23692648)
chr4 (172-318)||(16300977-16301122)
chr4 (134-215)||(21545953-21546034)
chr4 (238-287)||(35150531-35150580)
[»] chr8 (7 HSPs)
chr8 (175-414)||(12843051-12843288)
chr8 (118-311)||(10516817-10517010)
chr8 (111-228)||(20706627-20706743)
chr8 (111-285)||(35104098-35104272)
chr8 (235-309)||(18535293-18535368)
chr8 (259-298)||(24502648-24502687)
chr8 (384-416)||(15177576-15177608)
[»] chr1 (7 HSPs)
chr1 (138-374)||(34488093-34488327)
chr1 (149-318)||(17048213-17048382)
chr1 (118-292)||(11833206-11833378)
chr1 (222-290)||(12900632-12900700)
chr1 (119-162)||(40817403-40817446)
chr1 (190-261)||(12889337-12889407)
chr1 (146-264)||(36755289-36755406)
[»] chr2 (6 HSPs)
chr2 (118-309)||(29966507-29966699)
chr2 (113-264)||(18114603-18114753)
chr2 (140-290)||(30462607-30462756)
chr2 (118-236)||(16195375-16195493)
chr2 (122-290)||(21538820-21538987)
chr2 (344-413)||(18114825-18114894)
[»] chr6 (2 HSPs)
chr6 (125-290)||(14760801-14760966)
chr6 (274-369)||(33546283-33546375)
[»] chr5 (4 HSPs)
chr5 (138-373)||(25954549-25954781)
chr5 (118-216)||(16687561-16687658)
chr5 (227-291)||(11848679-11848743)
chr5 (223-291)||(22186035-22186103)
[»] chr3 (1 HSPs)
chr3 (239-285)||(2120540-2120586)


Alignment Details
Target: chr7 (Bit Score: 360; Significance: 0; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 430
Target Start/End: Complemental strand, 32562934 - 32562523
Alignment:
Q  19 ctaacaatttaaaaggcctaaagatttgagtaaataaaaaggacttaatcattcttgaaattttttattcaaaaatatgaagaccatacaaaagagtcct 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  32562934 ctaacaatttaaaaggcctaaagatttgagtaaataaaaaggacttaatcatttttgaaattttttattcaaaaatatgaagaccacacaaaagagtcct 32562835  T
Q  119 tgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactagg 218  Q
    ||||||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  32562834 tgtttgaagattgataactcatcaaattctttcttgagaagttttgattcagatttgaaaactttgcttcaaatggataatgtcgttgaattgtactagg 32562735  T
Q  219 aatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgattaaagaagacaaacaatactat 318  Q
    ||| |||||||||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32562734 aatatcctttgtttcttatggaatcacctgttacattctctttgtcattaaagttctttgtttgtttctgcacatgattaaagaagacaaacaatactat 32562635  T
Q  319 tagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttccttcaaaac 418  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||||||||||||    
T  32562634 tagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagccacctatattgttgatgtgtccatcataacttgcttccttcaaaac 32562535  T
Q  419 atgttcatctca 430  Q
    ||||||||||||    
T  32562534 atgttcatctca 32562523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 118 - 375
Target Start/End: Complemental strand, 5459652 - 5459397
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 217  Q
    ||||||||||| || ||   |||||||||| |||||  |||| ||||| |||  |||||||||||||| || |||||||||||  ||||||| ||||||     
T  5459652 ttgtttgaagagtgttagtgcatcaaattcgtccttaggaagctttgaatcagttttgaaaactttgcctctaatggataatgatgttgaatagtactac 5459553  T
Q  218 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatact 316  Q
      | |||||||||| ||  | ||||||||||||||||||||||||||| | || |||||||||||||| ||||| || | | || |||| ||||||||||    
T  5459552 ataggtcctttgttactggtagaatgatctgttacattctctttgccactgaatttctttgtttgtttttgcacgtggtcagaaaaagataaacaatact 5459453  T
Q  317 attagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcac 375  Q
    || ||   || |||| ||||||| ||||| ||||||||||||||| | || ||||||||    
T  5459452 atcag---aattttgaaagcgacgtttctccaaaagaagacaaaattggtgagagtcac 5459397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 368 - 430
Target Start/End: Complemental strand, 32562212 - 32562150
Alignment:
Q  368 agagtcacttatattgttgatgtgtccatcagaacttgcttccttcaaaacatgttcatctca 430  Q
    |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32562212 agagccacctatattgttgatgtgtccatcagaacttgcttccttcaaaacatgttcatctca 32562150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 138 - 269
Target Start/End: Complemental strand, 4123150 - 4123020
Alignment:
Q  138 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 237  Q
    ||||||||||||| |||||||| ||| || ||||||| || ||| ||| ||  ||||||||||| ||| ||||||| |||  | ||| ||||||||||||    
T  4123150 catcaaattcttcattgagaagctttcat-catattttaatactctgcctctgatggataatgtcgttaaattgtattagagaagtcatttgtttcttat 4123052  T
Q  238 ggaatgatctgttacattctctttgccattaa 269  Q
     ||||||||||||||||  |||||||||||||    
T  4123051 agaatgatctgttacatattctttgccattaa 4123020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 171 - 291
Target Start/End: Complemental strand, 4514328 - 4514208
Alignment:
Q  171 atttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaa 270  Q
    ||||||||||||||| |||| |||||||||| ||||||| ||| | | ||  || |||| ||| |||||||||||||| |||||| |||||||| || ||    
T  4514328 atttgaaaactttgcatcaattggataatgtcgttgaatagtatttgaaaaatcatttgcttcatatggaatgatctgctacattatctttgcctttgaa 4514229  T
Q  271 gttctttgtttgtttctgcac 291  Q
     || ||||||||||| |||||    
T  4514228 tttatttgtttgtttatgcac 4514208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 225 - 291
Target Start/End: Original strand, 21019822 - 21019888
Alignment:
Q  225 ctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 291  Q
    ||||| |||| |||||||||| ||||||||||||||| || || || || |||||||||||| ||||    
T  21019822 ctttgcttctaatggaatgatttgttacattctctttccccttgaatttttttgtttgtttcagcac 21019888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 384 - 417
Target Start/End: Original strand, 19650499 - 19650532
Alignment:
Q  384 ttgatgtgtccatcagaacttgcttccttcaaaa 417  Q
    ||||||||||||||||||||||||| ||||||||    
T  19650499 ttgatgtgtccatcagaacttgctttcttcaaaa 19650532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 226 - 291
Target Start/End: Complemental strand, 39227831 - 39227766
Alignment:
Q  226 tttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 291  Q
    ||||||||||||  |||||| |||||||||||| ||| | ||||  |||||||||| |||||||||    
T  39227831 tttgtttcttatataatgatatgttacattctccttgtctttaattttctttgtttatttctgcac 39227766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 69; Significance: 8e-31; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 111 - 416
Target Start/End: Original strand, 20748140 - 20748443
Alignment:
Q  111 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 210  Q
    |||||| |||||||||||  || ||| |||||||||| | ||||||||| ||||| |||  ||||||||| |||  || |||||||||||| ||| |||     
T  20748140 agagtcgttgtttgaagagggccaacacatcaaattcgttcttgagaagctttgaatcaattttgaaaacgttgtctctaatggataatgtcgttaaata 20748239  T
Q  211 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 309  Q
    |||||||  |  ||||||| ||||||| ||||||| |||||||||||||||||| || || || ||||||||||| ||||| || ||| || ||||||||    
T  20748240 gtactagagaaatcctttgcttcttatcgaatgatgtgttacattctctttgccgttgaatttttttgtttgtttttgcacgtggttagaaaaagacaaa 20748339  T
Q  310 caatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttc 409  Q
    || |||||  ||   ||||||| || | || || | ||| |||||||||||||||||||  ||||  ||   | ||||||||||| | ||||| ||||||    
T  20748340 cagtactaccag---aactttgaaaacaacgttccatcataagaagacaaaactagtcatggtcatctaggctattgatgtgtcctttagaacatgcttc 20748436  T
Q  410 cttcaaa 416  Q
    |||||||    
T  20748437 cttcaaa 20748443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 133 - 317
Target Start/End: Complemental strand, 16404559 - 16404374
Alignment:
Q  133 taactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgttt 232  Q
    |||| |||||||||| | ||||||||||||||| ||| ||||||||||||| | ||||||||| || || |||||||  || |||    || ||||| ||    
T  16404559 taacacatcaaattcgttcttgagaagttttgaatcagatttgaaaacttttcctcaaatggagaacgtcgttgaataatattagaggagttctttgctt 16404460  T
Q  233 cttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatacta 317  Q
    ||||||||||||| ||||||| |||||||| |||| ||||| |||||||||||| |||| || | | ||||||||||||| |||||    
T  16404459 cttatggaatgatttgttacaatctctttgtcattgaagttatttgtttgtttcagcacgtggtcagaagaagacaaacagtacta 16404374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 111 - 310
Target Start/End: Complemental strand, 17651480 - 17651280
Alignment:
Q  111 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 210  Q
    |||||| |||||||| | | || ||||||||||| |||| ||||| ||| |||  |||| |||||||||  || |||||| |||||||||| ||||| |     
T  17651480 agagtcgttgtttgatgctggccaactcatcaaaatctttcttgataagattttgttcaaatttgaaaatatttcttcaattggataatgtcgttgagta 17651381  T
Q  211 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 309  Q
    ||||| |  |  ||| ||| |||||||||||||||  |||||||||||||||| |||||| |||| || |||||||||||| || ||| |||||||||||    
T  17651380 gtacttgagaaatcccttgcttcttatggaatgatacgttacattctctttgctattaaatttctctgcttgtttctgcacgtggttagaagaagacaaa 17651281  T
Q  310 c 310  Q
    |    
T  17651280 c 17651280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 203 - 414
Target Start/End: Original strand, 17743551 - 17743757
Alignment:
Q  203 gttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aag 301  Q
    ||||||| ||||||| ||  | ||||||| ||| |||||||||||||||||||||||||| |||| || |||||||||||||||||||| || | | |||    
T  17743551 gttgaatagtactagaaaaattctttgttacttgtggaatgatctgttacattctctttgtcattgaacttctttgtttgtttctgcacgtggtcataag 17743650  T
Q  302 aagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaa 401  Q
    |||||||| | ||||||    | | ||||| ||| |   || | | |||||||||||||| | |||||||||||  | |||| |||||||||| ||| ||    
T  17743651 aagacaaatagtactat---caaagctttgaaagag---ttccataaaaagaagacaaaattggtcagagtcacccaaattgctgatgtgtccttcaaaa 17743744  T
Q  402 cttgcttccttca 414  Q
    |||||||||||||    
T  17743745 cttgcttccttca 17743757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 134 - 261
Target Start/End: Original strand, 39938421 - 39938547
Alignment:
Q  134 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtac-taggaatgtcctttgttt 232  Q
    |||||||||||||| ||||||||||| || ||  || ||||||||||||||| |||| || ||||||| ||||||| |||| | ||||  ||||||  ||    
T  39938421 aactcatcaaattcgtccttgagaagctt-gac-cagatttgaaaactttgcctcaattgtataatgtcgttgaatagtacattggaaaatccttttatt 39938518  T
Q  233 cttatggaatgatctgttacattctcttt 261  Q
    ||||  |||||||||||| ||||||||||    
T  39938519 cttaaagaatgatctgttgcattctcttt 39938547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 247 - 294
Target Start/End: Original strand, 6116088 - 6116135
Alignment:
Q  247 tgttacattctctttgccattaaagttctttgtttgtttctgcacatg 294  Q
    ||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  6116088 tgttacattctctttgctattgaagttctttgtttgtttatgcacatg 6116135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 118 - 267
Target Start/End: Original strand, 23692500 - 23692648
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 217  Q
    ||||||||||||||| |||| ||||| ||  | ||||||||  |||||| || |||| |||  ||||| ||||||||||||||| ||| ||| ||||| |    
T  23692500 ttgtttgaagattgccaactaatcaagttaattcttgagaaactttgat-cagatttaaaatttttgcctcaaatggataatgtcgttcaatagtacttg 23692598  T
Q  218 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccatt 267  Q
        ||| |||| |||||| |||||||||||||||| ||| |||| ||||    
T  23692599 aggagtcttttgcttcttagggaatgatctgttacactctttttgtcatt 23692648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 318
Target Start/End: Complemental strand, 16301122 - 16300977
Alignment:
Q  172 tttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaag 271  Q
    ||||||||||| ||||| ||| |||||||| ||||||| ||||||   |  |||||| || | |||| |||||||| |||||||||||||| || | ||     
T  16301122 tttgaaaacttcgcttctaatagataatgtagttgaatagtactaaataaatccttttttacgtatgaaatgatctattacattctctttgtcaatgaa- 16301024  T
Q  272 ttctttgtttgtttctgcacatgatta-aagaagacaaacaatactat 318  Q
     | | |||||||||||||||||| | | ||||||||| || |||||||    
T  16301023 -tttatgtttgtttctgcacatggtcagaagaagacagacgatactat 16300977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 215
Target Start/End: Complemental strand, 21546034 - 21545953
Alignment:
Q  134 aactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtact 215  Q
    ||||||||||| || ||||||||||  |||||||   ||||||||| ||||| |||| |||||||||| ||| ||| |||||    
T  21546034 aactcatcaaaatcgtccttgagaatctttgatttggatttgaaaattttgcctcaattggataatgtcgttaaatagtact 21545953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 238 - 287
Target Start/End: Complemental strand, 35150580 - 35150531
Alignment:
Q  238 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttct 287  Q
    ||||| || |||||||||||||||||| || ||||||||| |||||||||    
T  35150580 ggaatcatttgttacattctctttgcctttgaagttctttatttgtttct 35150531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 67; Significance: 1e-29; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 175 - 414
Target Start/End: Original strand, 12843051 - 12843288
Alignment:
Q  175 gaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttc 274  Q
    ||||| ||||| || |||||| ||||| ||||||| ||||||  ||| || |||| |||||  ||||| |||  ||||||||| ||||||||||||||||    
T  12843051 gaaaattttgcctctaatggacaatgtcgttgaatagtactataaatctcatttgcttctttaggaataatccattacattctatttgccattaaagttc 12843150  T
Q  275 tttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcagagtc 373  Q
    ||||||||||| |||| ||| | | |||||||||| ||||||||| ||   ||||||| ||||||  || ||||| |||||||||||||| |||| ||||    
T  12843151 tttgtttgtttttgcatatggtcagaagaagacaagcaatactatcag---aactttgaaagcgatgttgcttcagaagaagacaaaactggtcaaagtc 12843247  T
Q  374 acttatattgttgatgtgtccatcagaacttgcttccttca 414  Q
    ||  | ||||||||||||||  |||| ||||| || |||||    
T  12843248 acccaaattgttgatgtgtctttcagtacttgatttcttca 12843288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 118 - 311
Target Start/End: Complemental strand, 10517010 - 10516817
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 217  Q
    |||||||||| |||  ||||||||||| || ||||  ||||| ||||||| | |||||||| |||||| |||||||||||||||  ||||||  |||||     
T  10517010 ttgtttgaaggttgtcaactcatcaaaatcgtcctcaagaagctttgatttaaatttgaaa-ctttgcctcaaatggataatgtcattgaataatactat 10516912  T
Q  218 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaaca 311  Q
     || ||| |||  |||||||| |||||| ||||||||||||||||||||| ||||||| |||||| |||||||| || | | |||||||||||||    
T  10516911 aaaagtcattttcttcttatgaaatgatttgttacattctctttgccattgaagttctatgtttgcttctgcacgtggtcagaagaagacaaaca 10516817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 20706627 - 20706743
Alignment:
Q  111 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 210  Q
    |||||| ||||||||||| ||  | | |||||||||| || |||||||| ||||||  | ||||| ||||||||| || |||||||||||| |||||||     
T  20706627 agagtcgttgtttgaagagtgtcagcgcatcaaattcctctttgagaagctttgatgaa-atttgtaaactttgcctctaatggataatgtcgttgaata 20706725  T
Q  211 gtactaggaatgtccttt 228  Q
    ||||||| ||||||||||    
T  20706726 gtactagaaatgtccttt 20706743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 111 - 285
Target Start/End: Complemental strand, 35104272 - 35104098
Alignment:
Q  111 agagtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaatt 210  Q
    |||| ||||| ||||||||||| ||||||||||| || | ||||||||| ||||||||| |||||  || ||||  |||||||||   | | |||||||     
T  35104272 agagcccttggttgaagattgccaactcatcaaagtcattcttgagaagctttgattcagatttg-gaattttgtctcaaatggaatctatcgttgaata 35104174  T
Q  211 gtactaggaatgtcctttgtttcttatggaatgatctgttacattctctttgcca-ttaaagttctttgtttgttt 285  Q
    |||| | ||  ||| ||||||| ||| | |||||| |||||||||||||||| || || ||||| |||||||||||    
T  35104173 gtaccaagagcgtcatttgttttttaggtaatgatatgttacattctctttgtcatttgaagttgtttgtttgttt 35104098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 309
Target Start/End: Original strand, 18535293 - 18535368
Alignment:
Q  235 tatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 309  Q
    ||||||||||| ||||||||||| ||| || ||||| || ||||||||||||| ||||| |||| |||||||||||    
T  18535293 tatggaatgatttgttacattctttttacctttaaacttttttgtttgtttctacacattattagaagaagacaaa 18535368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 259 - 298
Target Start/End: Complemental strand, 24502687 - 24502648
Alignment:
Q  259 tttgccattaaagttctttgtttgtttctgcacatgatta 298  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  24502687 tttgtcattaaagttctttgtttgtttctgcacatgatta 24502648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 384 - 416
Target Start/End: Complemental strand, 15177608 - 15177576
Alignment:
Q  384 ttgatgtgtccatcagaacttgcttccttcaaa 416  Q
    ||||||||||||||||||||||||||| |||||    
T  15177608 ttgatgtgtccatcagaacttgcttccatcaaa 15177576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 138 - 374
Target Start/End: Original strand, 34488093 - 34488327
Alignment:
Q  138 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 237  Q
    |||||||||| | ||||||||||||| || || ||||||||||||||| || |||| |||| || ||||||| |||||||    |||||||| |||||      
T  34488093 catcaaattcgttcttgagaagttttaat-cagatttgaaaactttgcctctaatgaataaagtcgttgaatagtactagaggggtcctttgattctttg 34488191  T
Q  238 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgat--taaagaagacaaacaatactattagtataactttggaag 335  Q
     ||||||||  |||||||||||||| |||| ||||||||||||||||||||||| |  |   ||| ||||||||||||||||| ||    |||||| ||     
T  34488192 tgaatgatccattacattctctttgtcattgaagttctttgtttgtttctgcacgtcgtcaaaaaaaagacaaacaatactatcag---cactttgaaaa 34488288  T
Q  336 cgacatttcttcaaaagaagacaaaactagtcagagtca 374  Q
    |||| || ||||| |||||||||||||| ||||||||||    
T  34488289 cgacgttccttcataagaagacaaaactggtcagagtca 34488327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 149 - 318
Target Start/End: Complemental strand, 17048382 - 17048213
Alignment:
Q  149 tccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctg 248  Q
    ||||||||||  ||||||||||||||||||||||| | | || || ||||||| ||| ||| ||||| |    ||||||||||||||| |||||||||||    
T  17048382 tccttgagaatatttgattcatatttgaaaactttaccttaattg-ataatgtcgttaaatagtacttgaggagtcctttgtttcttagggaatgatctg 17048284  T
Q  249 ttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatactat 318  Q
    ||||||||||||||||||| ||  ||| ||||||||||| ||| || | | || |||||||||||||||||    
T  17048283 ttacattctctttgccattgaatatctatgtttgtttctacacgtggtcagaaaaagacaaacaatactat 17048213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 118 - 292
Target Start/End: Original strand, 11833206 - 11833378
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 217  Q
    |||||| |||| ||| ||| ||||| |||||||||| | ||| |||||| || |||||||||||| || |||||||||| |||| ||||||| ||||||     
T  11833206 ttgtttaaagagtgccaacacatcagattcttccttaaaaagctttgat-caaatttgaaaactt-gcctcaaatggattatgtcgttgaatggtactat 11833303  T
Q  218 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcaca 292  Q
        || ||||| |||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||| ||||||    
T  11833304 atgagttctttgcttcttagggaatgatatgttacattctctttgtcattgaagttctttgtttatttttgcaca 11833378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 222 - 290
Target Start/End: Complemental strand, 12900700 - 12900632
Alignment:
Q  222 gtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 290  Q
    |||||||| |||||  |||||||| ||||||||||||||| ||||| || |||||||||||||| ||||    
T  12900700 gtcctttgcttctttgggaatgatttgttacattctcttttccattgaaattctttgtttgtttttgca 12900632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 119 - 162
Target Start/End: Complemental strand, 40817446 - 40817403
Alignment:
Q  119 tgtttgaagattgctaactcatcaaattcttccttgagaagttt 162  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||    
T  40817446 tgtttgaagattgctaactcatcaacttcatccttgagaagttt 40817403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 190 - 261
Target Start/End: Complemental strand, 12889407 - 12889337
Alignment:
Q  190 aatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgatctgttacattctcttt 261  Q
    |||||||||||| ||||||| ||| ||| | | ||||||| ||||| ||||||||| |||||||||||||||    
T  12889407 aatggataatgtcgttgaatagtattag-agtttcctttgcttcttttggaatgatttgttacattctcttt 12889337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 146 - 264
Target Start/End: Complemental strand, 36755406 - 36755289
Alignment:
Q  146 tcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatggaatgat 245  Q
    |||||||||||||||||||| | | |||||||| ||||||||| ||||||| |    ||||||| |||||||   | || |||| ||||| |||||| ||    
T  36755406 tcttccttgagaagttttgaat-agatttgaaagctttgcttctaatggatgactatgttgaatagtactagaggtttcttttgcttcttttggaataat 36755308  T
Q  246 ctgttacattctctttgcc 264  Q
    ||||| |||||| ||||||    
T  36755307 ctgttgcattctatttgcc 36755289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 118 - 309
Target Start/End: Complemental strand, 29966699 - 29966507
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 217  Q
    ||||||||| ||| | ||||||||||| ||  | |||||||| |||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |    
T  29966699 ttgtttgaatatttccaactcatcaaaatcacctttgagaagctttgattcatatttgaaaactttgcttcaattggataatgtcgttgaatagtactcg 29966600  T
Q  218 gaatgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaa 309  Q
      |  || |||| ||||||||||||||||  ||||||| |||||||  || || || |||||||| |||| ||| || ||| |||||||||||    
T  29966599 agaaatcatttgcttcttatggaatgatccattacattatctttgcgtttgaatttatttgtttgattctacacgtggttagaagaagacaaa 29966507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 113 - 264
Target Start/End: Original strand, 18114603 - 18114753
Alignment:
Q  113 agtccttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgt 212  Q
    |||| ||||||||||||||| ||| |||||||||| ||||||||||| ||||| || |||||||||||||||| || |||||||| | | ||||||| ||    
T  18114603 agtcattgtttgaagattgccaacgcatcaaattcgtccttgagaagctttga-tcgtatttgaaaactttgcctctaatggatagtatcgttgaatagt 18114701  T
Q  213 actaggaatgtcctttgtttcttatggaatgatctgttacattctctttgcc 264  Q
    |||||   | || |||| ||||| |||||| ||||||| |||||| ||||||    
T  18114702 actagaggtttcttttgcttcttttggaataatctgttgcattctatttgcc 18114753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 140 - 290
Target Start/End: Original strand, 30462607 - 30462756
Alignment:
Q  140 tcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttatgg 239  Q
    |||||||| ||||| ||||| |||||| ||||||||||| |||||| || |||||||||||| ||| ||| |||| || ||  || |||| |||||||      
T  30462607 tcaaattcatcctttagaagctttgat-catatttgaaagctttgcctctaatggataatgtcgttaaatagtacaagaaaaatcgtttgcttcttatat 30462705  T
Q  240 aatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 290  Q
    |||||| ||||||||| ||||||||||| ||||||||| |||||| |||||    
T  30462706 aatgatttgttacattttctttgccattgaagttctttatttgttactgca 30462756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 16195493 - 16195375
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactag 217  Q
    |||||||| |||| | ||||||||||| || ||||||||||| ||||||| | ||||||||  ||| | |||||| ||||||||  | ||||||| |||     
T  16195493 ttgtttgaggattaccaactcatcaaaatcatccttgagaagctttgatttagatttgaaattttttcctcaaattgataatgttttcgaattgttctat 16195394  T
Q  218 gaatgtcctttgtttctta 236  Q
    ||| ||| |||| ||||||    
T  16195393 gaaagtcatttgcttctta 16195375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 122 - 290
Target Start/End: Complemental strand, 21538987 - 21538820
Alignment:
Q  122 ttgaagattgctaactcatcaaattcttccttgagaagttttgattcatattt-gaaaactttgcttcaaatggataatgtggttgaattgtac-tagga 219  Q
    ||||||||||| ||| |||||||||| | ||||||||| || ||| ||||||| ||||||||||| |||| |||||||| | ||||||| || | || ||    
T  21538987 ttgaagattgccaacacatcaaattcgttcttgagaagctt-gat-catattttgaaaactttgcctcaattggataatatcgttgaatagtgcttaaga 21538890  T
Q  220 atgtcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 290  Q
    |  ||||||| | | ||||||||||| ||||||||| |  ||||| || || |||||||||||||| ||||    
T  21538889 a-atcctttgctgcatatggaatgatttgttacatttttcttgcctttgaatttctttgtttgtttttgca 21538820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 344 - 413
Target Start/End: Original strand, 18114825 - 18114894
Alignment:
Q  344 cttcaaaagaagacaaaactagtcagagtcacttatattgttgatgtgtccatcagaacttgcttccttc 413  Q
    ||| |||||||||||||||||| ||||||| |||| | || ||| |||||| |||||  |||||||||||    
T  18114825 ctttaaaagaagacaaaactaggcagagtctcttagaatgctgacgtgtccttcagatattgcttccttc 18114894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 3e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 125 - 290
Target Start/End: Original strand, 14760801 - 14760966
Alignment:
Q  125 aagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtc 224  Q
    |||||||  ||||||||||| |||||||| | ||| ||||||||| |||| |||||||||| || | ||| |||||| ||||||| |||||||||   ||    
T  14760801 aagattgtcaactcatcaaaatcttccttcataagctttgattcagatttaaaaactttgcctcgattgggtaatgtcgttgaatagtactaggagaatc 14760900  T
Q  225 ctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgca 290  Q
    |||||  ||||| ||||| || ||||||||  | ||||||||||||||||||||| ||||| ||||    
T  14760901 ctttgcctcttaaggaataatttgttacatcatttttgccattaaagttctttgtatgtttttgca 14760966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 274 - 369
Target Start/End: Original strand, 33546283 - 33546375
Alignment:
Q  274 ctttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagcgacatttcttcaaaagaagacaaaactagtcag 369  Q
    ||||||||||||||||||||| | | ||||||||||||||||||    | ||||||| | | ||||| | ||||||||| |||| ||||||||||||    
T  33546283 ctttgtttgtttctgcacatggtcagaagaagacaaacaatact----gcataacttggaatgcgacgtctcttcaaaaaaagaaaaaactagtcag 33546375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 138 - 373
Target Start/End: Complemental strand, 25954781 - 25954549
Alignment:
Q  138 catcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtactaggaatgtcctttgtttcttat 237  Q
    |||||| ||| || |||||||| |||||| || |||||||||||||||  | ||| ||||||||  ||||||  ||||||    |||||||| ||||| |    
T  25954781 catcaagttcgtcattgagaagctttgat-caaatttgaaaactttgccactaattgataatgtcattgaataatactagatgagtcctttgcttctttt 25954683  T
Q  238 ggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcacatgatta-aagaagacaaacaatactattagtataactttggaagc 336  Q
     ||||||||||   |||||  |||||| || ||||||||||||| ||||||||||   | | ||||||||||||||||| ||    |||| |||| ||||    
T  25954682 agaatgatctggaccattccttttgcctttgaagttctttgtttatttctgcacaaagtcataagaagacaaacaatacaat---cataattttgaaagc 25954586  T
Q  337 gacatttcttcaaaagaagacaaaactagtcagagtc 373  Q
    |||||||||| | |||||||||||||| |||| ||||    
T  25954585 gacatttctttagaagaagacaaaactggtcatagtc 25954549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 118 - 216
Target Start/End: Complemental strand, 16687658 - 16687561
Alignment:
Q  118 ttgtttgaagattgctaactcatcaaattcttccttgagaagttttgattcatatttgaaaactttgcttcaaatggataatgtggttgaattgtacta 216  Q
    ||||||||||||||  |||||||||||||| | ||| ||||| ||||| ||  ||||||||||||| | || |||||| |||||  |||||| ||||||    
T  16687658 ttgtttgaagattggaaactcatcaaattcatactttagaagctttga-tcggatttgaaaactttccctctaatggacaatgtcattgaatagtacta 16687561  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 227 - 291
Target Start/End: Complemental strand, 11848743 - 11848679
Alignment:
Q  227 ttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 291  Q
    ||||||||||| ||||||  ||||||||| ||||| || || || |||||||||| |||||||||    
T  11848743 ttgtttcttatagaatgaggtgttacattatcttttcctttgaatttctttgtttttttctgcac 11848679  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 223 - 291
Target Start/End: Original strand, 22186035 - 22186103
Alignment:
Q  223 tcctttgtttcttatggaatgatctgttacattctctttgccattaaagttctttgtttgtttctgcac 291  Q
    ||||||| |||||||  |||||  |||||||||||||||| | || || | ||||||||||||||||||    
T  22186035 tcctttgcttcttataaaatgacatgttacattctctttgtctttgaattcctttgtttgtttctgcac 22186103  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 239 - 285
Target Start/End: Complemental strand, 2120586 - 2120540
Alignment:
Q  239 gaatgatctgttacattctctttgccattaaagttctttgtttgttt 285  Q
    ||||||| |||||||||||||||| |||| |||||||||||||||||    
T  2120586 gaatgatatgttacattctctttgtcattgaagttctttgtttgttt 2120540  T

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