View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2368_high_3 (Length: 417)
Name: NF2368_high_3
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2368_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 224 - 406
Target Start/End: Original strand, 44174576 - 44174758
Alignment:
| Q |
224 |
tctggaacttctattgtaattgcatttctactgcacttatcatatgtttccctgagtactctcattcatgacaatttgagtctttctttttccatttgaa |
323 |
Q |
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| T |
44174576 |
tctggaacttccattgtaattgcatttctactgcacttatcatatgtttccctgagtactctcattcatgacaatttgagtctttctttttccatttgaa |
44174675 |
T |
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| Q |
324 |
tgcagtatctgagagaagaaatctctaggatcgatgagacttggactgctgctcgttttgattcgttacctcatgttgttcat |
406 |
Q |
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| T |
44174676 |
tgcagtatctgagagaagaaatctctaggatcgatgagacttggactgctgctcgttttgattcgttacctcatgttgttcat |
44174758 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 17 - 182
Target Start/End: Original strand, 44174414 - 44174579
Alignment:
| Q |
17 |
attttttggatgtaggattctttgcagcaactgtttcatatccttcatttttatatattagaagctaattgttttgcaaagagcttgaattaggatacat |
116 |
Q |
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| T |
44174414 |
attttttggatgtaggattctttgcagcaactgtttcatatccttcatttttatatattagaagctaattgttttgcaaagagcttgaattaggatacat |
44174513 |
T |
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| Q |
117 |
cacttgcaatttgagggtgggatcatatgttgaaagtggtctcttattttgagcattttaagtctg |
182 |
Q |
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| T |
44174514 |
cacttgcaatttgagggtgggatcatatgttgaaagtggtctcttattttgagcattttaagtctg |
44174579 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 1e-38; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 285 - 406
Target Start/End: Original strand, 6472095 - 6472215
Alignment:
| Q |
285 |
tcattcatgacaatttgagtctttctttttccatttgaatgcagtatctgagagaagaaatctctaggatcgatgagacttggactgctgctcgttttga |
384 |
Q |
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| T |
6472095 |
tcattgatgacaaattgagtctttgtttt-ctatttgaatgcagtatctgagggaagaactctctaggatagatgagacttggactgttgctcgttttga |
6472193 |
T |
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| Q |
385 |
ttcgttacctcatgttgttcat |
406 |
Q |
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| T |
6472194 |
ttcgttacctcatgttgttcat |
6472215 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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