View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2368_high_4 (Length: 358)
Name: NF2368_high_4
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2368_high_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 18 - 343
Target Start/End: Complemental strand, 46047075 - 46046756
Alignment:
| Q |
18 |
gttggagcctcatggaaccggattttctaatgataatgacgaaagtcatgaaacagataacagttttgctgtgcttgttccttgttatggatacagttac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
46047075 |
gttggagcctcatggaaccggattttctaatgataatgacgaaagtcatgaaacagataacagttttgctgtgcttgttccttgttatggatacaattac |
46046976 |
T |
|
| Q |
118 |
ggtgccatgttggaggagggtcctaaaagcaacttactaaacaatgttgggaacttctcatatggtaaggctaaactaaaccactaagatagaattagaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46046975 |
ggtgccatgttggaggagggtcctaaaagcaacgtactaaacaatgttgggaacttctcatatggtaaggctaaactaaaccactaagatagaattagaa |
46046876 |
T |
|
| Q |
218 |
ataaattggattgctagataaagtgttgatgttaatgtttctgttagaaataaatttggtgctttctgttttctcnnnnnnnnnnnnnncttgagtggta |
317 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
46046875 |
ataaattggattgctagataaag------tgttaatgtttctgttagaaataaatttggtgctttctgttttctctttttttattttttcttgagtggta |
46046782 |
T |
|
| Q |
318 |
aaatgctaatgtgtatggttcctttg |
343 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
46046781 |
aaatgctaatgtgtatggttcctttg |
46046756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University