View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2368_low_1 (Length: 497)
Name: NF2368_low_1
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2368_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 175 - 480
Target Start/End: Complemental strand, 11290749 - 11290443
Alignment:
| Q |
175 |
tgctcaatttatctaattaattttaatggattttgatattcatgcctgattattaggtgggaaaatgttttcatgagacgaatcagtattgatataattt |
274 |
Q |
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| T |
11290749 |
tgctcaatttatctaattaattttaatggattttgatattcatgcctgattattaggtgggaaaatgttttcatgagacgaatcagtattgatataattt |
11290650 |
T |
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| Q |
275 |
atttataaagtcaacttctaccaacacatatcagtcaatttcttcttggcttagagtctccaattgggtccaattcacag-nnnnnnnaaatataagcca |
373 |
Q |
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| T |
11290649 |
atttataaagtcaacttctaccaacacatatcagtcaatttcttcttagattagagtctccaatt-ggtctaattcacagttttttttaaatataagcca |
11290551 |
T |
|
| Q |
374 |
aatacatgatcgcaaaacatgtttgacagactattctcatagataactaccgacaatggtagtttagtaccc-aaaagaaaacataacttaaactaaaca |
472 |
Q |
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| T |
11290550 |
aatacatgatcgcaaaacatgtttgacagacgattctcatagataactaccgacaatggtagtttagtacccaaaaagaaaacataacttaaactaaaca |
11290451 |
T |
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| Q |
473 |
cttgatta |
480 |
Q |
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|||||||| |
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| T |
11290450 |
cttgatta |
11290443 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 25 - 128
Target Start/End: Complemental strand, 11290865 - 11290762
Alignment:
| Q |
25 |
gcataggcataggtgatttgagttttctaaaatagttgagcattaaggaagaggaggttgttgaagctgctcttgattcaagtcaagatttcatggtcat |
124 |
Q |
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| T |
11290865 |
gcataggcataggtgatttgagtttactaaaatagttgagccttaaggaagaggaggttgttgaagctgctcttgattcaagtcaagatttcatggtcat |
11290766 |
T |
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| Q |
125 |
tgct |
128 |
Q |
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|||| |
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| T |
11290765 |
tgct |
11290762 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 363 - 403
Target Start/End: Original strand, 7142675 - 7142715
Alignment:
| Q |
363 |
aatataagccaaatacatgatcgcaaaacatgtttgacaga |
403 |
Q |
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|||| ||||||||||||||||| ||||||||||| |||||| |
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| T |
7142675 |
aatacaagccaaatacatgatcccaaaacatgttcgacaga |
7142715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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