View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2368_low_5 (Length: 343)
Name: NF2368_low_5
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2368_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 292; Significance: 1e-164; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 16 - 315
Target Start/End: Original strand, 4077977 - 4078276
Alignment:
| Q |
16 |
ggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagtagcagtgatgattagtggagaag |
115 |
Q |
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| T |
4077977 |
ggaatggttatgcctcatataatggaaattcctcaaaaataccgatgtactatggaggctaatattgttgatctagtagcagtgatgattagtggagaag |
4078076 |
T |
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| Q |
116 |
aagatttaggaatggttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgcctt |
215 |
Q |
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| T |
4078077 |
aagatttaggaatggttgacacatagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgcctt |
4078176 |
T |
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| Q |
216 |
gttcgactgcaaaaaactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
315 |
Q |
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| T |
4078177 |
gttcgactccaaaaaactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
4078276 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 170; E-Value: 3e-91
Query Start/End: Original strand, 130 - 315
Target Start/End: Original strand, 4100846 - 4101031
Alignment:
| Q |
130 |
gttgacacatagaatatattcacacaagtgagggtggaacataacaagggtgagattgattggataatagatgaaatttatgccttgttcgactgcaaaa |
229 |
Q |
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| T |
4100846 |
gttgacacgtagaatatattcacacaagtgagggtggcacataacaagggtgagattgattggataatagatgaaatttatgccttgttcaactgcaaaa |
4100945 |
T |
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| Q |
230 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaatgtgaaggatggtgtg |
315 |
Q |
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| T |
4100946 |
aactagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcctaaactgagggaatgtgaaggatggtgtg |
4101031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 233 - 290
Target Start/End: Complemental strand, 4502677 - 4502620
Alignment:
| Q |
233 |
tagggaggatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaa |
290 |
Q |
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| T |
4502677 |
tagggaggatatggactccgcatcagttgtacctaaagttcatggaattcctcccaaa |
4502620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 240 - 299
Target Start/End: Original strand, 19568715 - 19568774
Alignment:
| Q |
240 |
gatatggactttgcatcatttgtatctcaagttcttggaattcctcccaaactgagggaa |
299 |
Q |
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| T |
19568715 |
gatatggactatgtatcatctgtatctcaagttcatggaattcctctcaaagtgaaggaa |
19568774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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