View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2368_low_6 (Length: 237)
Name: NF2368_low_6
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2368_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 161; Significance: 5e-86; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4009158 - 4009322
Alignment:
| Q |
1 |
aaaaatccactacaatagtgtgaatgtgaaccaagatttgttttttcagcaagtgtgtaatcaagattaataagacaattagaatattttggtattaatt |
100 |
Q |
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| T |
4009158 |
aaaaatccactacaatagtgtgaaagtgaaccaagatttgttttttcagcaagtgtgtaatcaagattaataagacaattagaatattttggtattaatt |
4009257 |
T |
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| Q |
101 |
taaaatgtttgttaatttgtcaatcactaaattacaagtgagtaaaagttaaaactatgagaaga |
165 |
Q |
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| T |
4009258 |
taaaatgtttgttaatttgtcaatcactaaattacaagtgagtaaaagttaaaactatgagaaga |
4009322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 165
Target Start/End: Original strand, 4014550 - 4014714
Alignment:
| Q |
1 |
aaaaatccactacaatagtgtgaatgtgaaccaagatttgttttttcagcaagtgtgtaatcaagattaataagacaattagaatattttggtattaatt |
100 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4014550 |
aaaaatccactacaatagtgtgaaagtgaaccaagatttgttttttcagcaagtgtgtaatcaagattaataagacaattagaatattttggtattaatt |
4014649 |
T |
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| Q |
101 |
taaaatgtttgttaatttgtcaatcactaaattacaagtgagtaaaagttaaaactatgagaaga |
165 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4014650 |
taaaatgtttgttaatttgtcaatcactaaattacaagtgagtaaaagttaaaactatgagaaga |
4014714 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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