View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2368_low_7 (Length: 205)
Name: NF2368_low_7
Description: NF2368
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2368_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 176; Significance: 5e-95; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 31212985 - 31212810
Alignment:
| Q |
18 |
atctcaggcgggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactg |
117 |
Q |
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| T |
31212985 |
atctcaggcgggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactg |
31212886 |
T |
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| Q |
118 |
attggcatgattgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttca |
193 |
Q |
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| T |
31212885 |
attggcatgattgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttca |
31212810 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 5e-95
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 31218740 - 31218565
Alignment:
| Q |
18 |
atctcaggcgggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactg |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31218740 |
atctcaggcgggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactg |
31218641 |
T |
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| Q |
118 |
attggcatgattgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttca |
193 |
Q |
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| T |
31218640 |
attggcatgattgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttca |
31218565 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 7e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 7e-82
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 47896489 - 47896661
Alignment:
| Q |
18 |
atctcaggcgggctccacccagatacaatcttagacctagacggcatcagacgtaagtttagtctcaggggcgtgttgtggtgagccaattgtctaactg |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |
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| T |
47896489 |
atctcaggcgggctccacccagatacaatcttagacctagatggcatcagacgtaagtttagtctcag---cgtgttgtggtgagacaattgtctaactg |
47896585 |
T |
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| Q |
118 |
attggcatgattgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttca |
193 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47896586 |
attggcatgattgttaattttgttttgaaggttgcttcaaattgaaatattagttagtctttatttgtttgtttca |
47896661 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 145 - 175
Target Start/End: Complemental strand, 4957824 - 4957794
Alignment:
| Q |
145 |
aaggttgcttcaaattgaaatattagttagt |
175 |
Q |
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| T |
4957824 |
aaggttgcttcaaattgaaatattagttagt |
4957794 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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