View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF2369_high_12 (Length: 308)
Name: NF2369_high_12
Description: NF2369
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2369_high_12 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 292
Target Start/End: Original strand, 8803758 - 8804048
Alignment:
| Q |
1 |
aaacttgaaaaagccaagtgaaatttaaacataaggtataacttaaccnnnnnnnnncatatatgtaataaagaataaacgttatatatttattcatata |
100 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8803758 |
aaacttgaagaacccaagtgaaatttaaacataaggtataacttaacctttttttt-catatatgtaataaagaataaacgttatatatttattcatata |
8803856 |
T |
|
| Q |
101 |
caacatgactatgatcatgtaacnnnnnnntattgtaaaagaacaagattgattgtgtttgtttctttcttatctaggaagtttcaatattatgtttcaa |
200 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8803857 |
caacatgactatgatcatgtaacaaaaaaatattgtaaaagaacaagattgattgtgtttgtttctttcttatctaggaagtttcaatattatgtttcaa |
8803956 |
T |
|
| Q |
201 |
gctatgttcatcaagccaagaaatgatgtcaccaagaatttgagtaattgtttcatcagactcaccctcaattagggcatgttgagcatctt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8803957 |
gctatgttcatcaagccaagaaatgatgtcaccaagaatttgagtaattgtttcatcagactcaccctcaattagggcatgttgagcatctt |
8804048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 292
Target Start/End: Complemental strand, 7088591 - 7088300
Alignment:
| Q |
1 |
aaacttgaaaaagccaagtgaaatttaaacataaggtataacttaaccnnnnnnnnncatatatgtaataaagaataaacgttatatatttattcatata |
100 |
Q |
| |
|
||||||||| || ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7088591 |
aaacttgaagaacccaagtgaaatttaaacataaggtataacttaacctttttttttcatatatgtaataaagaataaacgttatatatttattcatata |
7088492 |
T |
|
| Q |
101 |
caacatgactatgatcatgtaacnnnnnnntattgtaaaagaacaagattgattgtgtttgtttctttcttatctaggaagtttcaatattatgtttcaa |
200 |
Q |
| |
|
|||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7088491 |
caacatgactttgatcatgtaacaaaaaaatattgtaaaagaacaagattgattgtgtttgtttctttcttaactaggaagtttcaatattatgtttcaa |
7088392 |
T |
|
| Q |
201 |
gctatgttcatcaagccaagaaatgatgtcaccaagaatttgagtaattgtttcatcagactcaccctcaattagggcatgttgagcatctt |
292 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7088391 |
gctatgttcatcaagccaagaaatgatgtcaccaagaatttgagtaattgtttcatcagactcaccctcaattagggcatgttgagcatctt |
7088300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University